An efficient approach for solving the HP protein folding problem based on UEGO

DOI10.1007/S10910-014-0459-1MaRDI QIDQ2353544zbMATH OpenOpenAlexWikidataFDO

Authors J. M. García-Martínez, E. M. Garzón, H. Pérez-Sánchez, José M. Cecilia, Pilar M. Ortigosa

Publication date 15 July 2015

Published in Journal of Mathematical Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s10910-014-0459-1

zbMATH Keywords

algorithm accelerationevolutionary algorithmHP modelmultiscale modelingprotein folding

Mathematics Subject Classification ID

Computational methods for problems pertaining to biology (92-08) Protein sequences, DNA sequences (92D20)

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Cites work

• A constraint-based approach to fast and exact structure prediction in three-dimensional protein models
• A population global optimization algorithm to solve the image alignment problem in electron crystallography
• A robust and efficient algorithm for planar competitive location problems
• A two-level evolutionary algorithm for solving the facility location and design \((1|1)\)-centroid problem on the plane with variable demand
• An approach for solving competitive location problems with variable demand using multicore systems
• Parallel algorithms for continuous competitive location problems
• Peptide structure prediction using distributed volunteer computing networks
• Protein structure prediction using distributed parallel particle swarm optimization
• Reliability and performance of UEGO, a clustering-based global optimizer
• UEGO, an abstract clustering technique for multimodal global optimization

Cited in

(2)

• Multiobjectivizing the HP model for protein structure prediction
• Lattice conformation of theta-curves accompanied with Brunnian property

Describes a project that uses

Uses Software

• PyMOL
• UEGO

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