Protein structure prediction using distributed parallel particle swarm optimization

DOI10.1007/S11047-012-9325-XMaRDI QIDQ269061zbMATH OpenOpenAlexFDO

Authors Ivan Kondov

Publication date 18 April 2016

Published in Natural Computing (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11047-012-9325-x

zbMATH Keywords

global optimizationparticle swarm optimizationforce fieldparallel and distributed computingprotein structure prediction

Mathematics Subject Classification ID

Problem solving in the context of artificial intelligence (heuristics, search strategies, etc.) (68T20) Protein sequences, DNA sequences (92D20)

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Cites work

• scientific article; zbMATH DE number 194544 (Why is no real title available?)
• A review of recent advances in global optimization
• Comparison of linear and classical velocity update rules in particle swarm optimization: notes on diversity
• Comparison of linear and classical velocity update rules in particle swarm optimization: notes on scale and frame invariance
• Optimization by simulated annealing
• Parallel asynchronous particle swarm optimization
• Parallel global optimization with the particle swarm algorithm

Cited in

(3)

• Parallel artificial bee colony algorithm approaches for protein structure prediction using the 3DHP-SC model
• Peptide structure prediction using distributed volunteer computing networks
• An efficient approach for solving the HP protein folding problem based on UEGO

Describes a project that uses

Uses Software

• ArFlock
• Open Babel
• PyMOL

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