An optimization approach to the problem of protein structure prediction
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Cites work
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- Isotropic effective energy simulated annealing searches for low energy molecular cluster states
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Cited in
(35)- Ab-initio prediction and reliability of protein structural genomics by PROPAINOR algorithm
- A quadratic approximation for protein sequence to structure mapping.
- Exploring the conformational space for protein folding with sequential Monte Carlo
- Mathematical programming in computational biology: an annotated bibliography
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- A global optimization method for the molecular replacement problem in X-ray crystallography
- Ab initio tertiary structure prediction of proteins
- A linear assignment approach for the least-squares protein morphing problem
- Incorporating a multiobjective knowledge-based energy function into differential evolution for protein structure prediction
- An improved hybrid global optimization method for protein tertiary structure prediction
- Protein structure prediction using distributed parallel particle swarm optimization
- Protein structure prediction with combinatorial optimization and fold recognition
- Prediction of low energy protein side chain configurations using Markov random fields
- Optimizing an empirical scoring function for transmembrane protein structure determination
- Enhanced bounding techniques to reduce the protein conformational search space
- Faster placement of hydrogens in protein structures by dynamic programming
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- Protein structure prediction based on BN-GRU method
- Heuristic quasi-physical algorithm for protein structure prediction
- CONCORD: a consensus method for protein secondary structure prediction via mixed integer linear optimization
- A Hierarchical Multiscale Approach to Protein Structure Prediction: Production of Low‐Resolution Packing Arrangements of Helices and Refinement of the Best Models with a United‐Residue Force Field
- Structure calculation of protein segments connecting domains with definded secondary structure: a simulated annealing Monte Carlo combined with biased scaled collective variables technique
- Chaotic variants of grasshopper optimization algorithm and their application to protein structure prediction
- Some operations research methods for analyzing protein sequences and structures
- A new class of hybrid global optimization algorithms for peptide structure prediction: integrated hybrids
- A finding maximal clique algorithm for predicting loop of protein structure
- Protein model refinement using structural fragment tessellation
- An integer programming model for protein structure prediction using the 3D-HP side chain model
- An application of a global optimization parametrization method on macromolecular structure problem
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