An improved hybrid global optimization method for protein tertiary structure prediction

DOI10.1007/s10589-009-9277-yzbMath1187.90276OpenAlexW2090758793WikidataQ30387510 ScholiaQ30387510MaRDI QIDQ2379695

Scott R. McAllister, Christodoulos A. Floudas

Publication date: 19 March 2010

Published in: Computational Optimization and Applications (Search for Journal in Brave)

Full work available at URL: https://europepmc.org/articles/pmc2847311

zbMATH Keywords

hybrid global optimization algorithmprotein tertiary structure prediction

Mathematics Subject Classification ID

Applications of mathematical programming (90C90) Nonlinear programming (90C30)

Related Items

Global energy minimization of alanine dipeptide via barrier function methods, CONCORD: a consensus method for protein secondary structure prediction via mixed integer linear optimization

Uses Software

• NPSOL
• DYANA
• RAPTOR
• X-PLOR
• PSI-BLAST
• BLAST
• GenThreader

Cites Work

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• Optimization by Simulated Annealing
• A new class of hybrid global optimization algorithms for peptide structure prediction: integrated hybrids
• Rapid calculation of coordinates from distance matrices
• Efficient parallel algorithms in global optimization of potential energy functions for peptides, proteins, and crystals
• A fast recursive algorithm for molecular dynamics simulation
• Ab initio tertiary structure prediction of proteins
• \(\alpha BB\): A global optimization method for general constrained nonconvex problems
• Distance geometry optimization for protein structures
• Side Chain-Positioning as an Integer Programming Problem