Incorporating a multiobjective knowledge-based energy function into differential evolution for protein structure prediction

DOI10.1016/J.INS.2020.06.003MaRDI QIDQ2053784zbMATH OpenOpenAlexFDO

Authors Xingqian Chen, Shuangbao Song, Junkai Ji, Zheng Tang, Yuki Todo

Publication date 30 November 2021

Published in Information Sciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.ins.2020.06.003

zbMATH Keywords

differential evolutionfree modelingknowledge-based energy functionmultiobjective optimizationprotein structure prediction

Mathematics Subject Classification ID

Evolutionary algorithms, genetic algorithms (computational aspects) (68W50) Computational methods for problems pertaining to biology (92-08) Protein sequences, DNA sequences (92D20)

Recommendations

• Evolutionary algorithms for protein structure prediction in lattice models
• Multiobjectivizing the HP model for protein structure prediction
• An optimization approach to the problem of protein structure prediction
• An improved hybrid global optimization method for protein tertiary structure prediction
• Three-dimensional protein structure prediction based on memetic algorithms

Cites work

• A novel differential evolution algorithm using local abstract convex underestimate strategy for global optimization
• Three-dimensional protein structure prediction based on memetic algorithms

Cited in

(8)

• A metaheuristic approach to protein structure prediction. Algorithms and insights from fitness landscape analysis
• Prediction of low energy protein side chain configurations using Markov random fields
• Multiobjectivizing the HP model for protein structure prediction
• Multi-objectivization, fitness landscape transformation and search performance: a case of study on the HP model for protein structure prediction
• A grid-based hybrid hierarchical genetic algorithm for protein structure prediction
• Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction
• Evolutionary algorithms for protein structure prediction in lattice models
• A knowledge-based approach to initial population generation in evolutionary algorithms: Application to the protein structure prediction problem

Describes a project that uses

Uses Software

• MOEA/D
• JADE

This page was built for publication: Incorporating a multiobjective knowledge-based energy function into differential evolution for protein structure prediction

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2053784)