Protein structure prediction with combinatorial optimization and fold recognition

MaRDI QIDQ2744185zbMATH OpenFDO

Authors Eckart Bindewald

Publication date 19 September 2001

zbMATH Keywords

amino acidsbest-first searchbranch and bound systemcanonical search algorithmenergy modelsmolecular dynamicsMonte CarloNeedleman-Wunsch alignment algorithmprotein structuresquantum mechanical modelssimulated annealing

Mathematics Subject Classification ID

Combinatorial optimization (90C27) Biochemistry, molecular biology (92C40)

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Cited in

(19)

• Strategies for protein folding and design
• Large-scale linear programming techniques for the design of protein folding potentials
• Prediction of \(\beta\)-turn types in protein by using composite vector
• What we can learn about protein folding from recent progress in structure prediction
• NONSYMMETRIC TWO-BODY SCORE FUNCTION FOR PROTEIN FOLD RECOGNITION: NEXT NEAREST NEIGHBOR-ADJACENCY OF TWO AMINO ACIDS
• ARIADNE: pattern-directed inference and hierarchical abstraction in protein structure recognition
• scientific article; zbMATH DE number 1945162 (Why is no real title available?)
• scientific article; zbMATH DE number 2081008 (Why is no real title available?)
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• Protein structure prediction based on BN-GRU method
• scientific article; zbMATH DE number 7410897 (Why is no real title available?)
• Using an abstraction of amino acid types to improve the quality of statistical potentials for protein structure prediction
• A Hierarchical Multiscale Approach to Protein Structure Prediction: Production of Low‐Resolution Packing Arrangements of Helices and Refinement of the Best Models with a United‐Residue Force Field
• scientific article; zbMATH DE number 5262721 (Why is no real title available?)
• Fold recognition using the OPLS all-atom potential and the surface generalized Born solvent model
• Research in Computational Molecular Biology
• Computational methods for protein structure prediction and modeling. Volume 1: Basic characterization.
• Computational methods for protein structure prediction and modeling. Volume 2: Structure prediction
• Determination of protein structure and dynamics combining immune algorithms and pattern search methods

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