Large-scale linear programming techniques for the design of protein folding potentials

DOI10.1007/S10107-004-0526-7MaRDI QIDQ1764228zbMATH OpenOpenAlexFDO

Authors Xianqiang Yang

Publication date 24 February 2005

Published in Mathematical Programming. Series A. Series B (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s10107-004-0526-7

Mathematics Subject Classification ID

Linear programming (90C05) Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40) Interior-point methods (90C51)

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(10)

• Faster maximum feasible subsystem solutions for dense constraint matrices
• Some operations research methods for analyzing protein sequences and structures
• Global energy minimization of alanine dipeptide via barrier function methods
• scientific article; zbMATH DE number 2081008 (Why is no real title available?)
• Mathematical programming in computational biology: an annotated bibliography
• The maximum feasible subset problem (maxFS) and applications
• A smoothing SQP framework for a class of composite \(L_q\) minimization over polyhedron
• Massively parallel all atom protein folding in a single day
• A linear assignment approach for the least-squares protein morphing problem
• A two-phase relaxation-based heuristic for the maximum feasible subsystem problem

Describes a project that uses

Uses Software

• PCx

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