A Python hands-on tutorial on network and topological neuroscience

DOI10.1007/978-3-030-80209-7_71MaRDI QIDQ2117924zbMATHOpenAlexFDO

Authors Eduarda Gervini Zampieri Centeno, Giulia Moreni, Chris Vriend, Linda Douw, Fernando Antônio Nóbrega Santos

Publication date 22 March 2022

Full work available at URL https://doi.org/10.1007/978-3-030-80209-7_71

zbMATH Keywords

topological data analysisdata visualisationnetwork neuroscience

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biomedical imaging and signal processing (92C55) Neural networks for/in biological studies, artificial life and related topics (92B20) Topological data analysis (62R40)

Recommendations

• Brain network analysis
• Higher-Order Description of Brain Function
• Analyzing complex functional brain networks: fusing statistics and network science to understand the brain
• An invitation to the study of brain networks, with some statistical analysis of thresholding techniques
• Classroom notes: using graph theory to analyze anatomical connectivity of the human brain

Cites work

• Clique topology reveals intrinsic geometric structure in neural correlations
• Cliques and cavities in the human connectome
• Collective dynamics of `small-world' networks
• Computational topology. An introduction
• Handbook of Graph Theory
• Modern approaches to discrete curvature
• Networks beyond pairwise interactions: structure and dynamics
• The Gudhi library: simplicial complexes and persistent homology
• The maximum clique problem
• Topological Signal Processing Over Simplicial Complexes
• Topology and data
• Topology for Computing
• What can topology tell us about the neural code?

Cited in

(2)

• Brain network analysis
• Data science and complex networks. Real case studies with Python

Describes a project that uses

Uses Software

• NetworkX
• SciPy
• Gudhi
• Python
• CliqueTop

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