Linear-scaling selected inversion based on hierarchical interpolative factorization for self Green's function for modified Poisson-Boltzmann equation in two dimensions

DOI10.1016/J.JCP.2021.110893MaRDI QIDQ2137994zbMATH OpenOpenAlexWikidataFDO

Authors Yihui Tu, Qiyuan Pang, Haizhao Yang, Zhenli Xu

Publication date 11 May 2022

Published in Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/2105.09200

zbMATH Keywords

elliptic operatorlinear scalinghierarchical interpolative factorizationmodified Poisson-Boltzmann equationsselected inverseself Green's function

Mathematics Subject Classification ID

Partial differential equations of mathematical physics and other areas of application (35Qxx) Numerical methods for partial differential equations, boundary value problems (65Nxx) Numerical linear algebra (65Fxx)

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Cites work

• A Fast Parallel Algorithm for Selected Inversion of Structured Sparse Matrices with Application to 2D Electronic Structure Calculations
• A direct solver with \(O(N)\) complexity for variable coefficient elliptic PDEs discretized via a high-order composite spectral collocation method
• A fast direct solver for elliptic problems on general meshes in 2D
• A free energy satisfying finite difference method for Poisson-Nernst-Planck equations
• A positivity-preserving, energy stable and convergent numerical scheme for the Poisson-Nernst-Planck system
• An \(O(N)\) algorithm for constructing the solution operator to 2D elliptic boundary value problems in the absence of body loads
• Asymptotic analysis on dielectric boundary effects of modified Poisson-Nernst-Planck equations
• Domain decomposition based \({\mathcal H}\)-LU preconditioning
• Fast algorithm for extracting the diagonal of the inverse matrix with application to the electronic structure analysis of metallic systems
• Fast sparse selected inversion
• Hierarchical interpolative factorization for elliptic operators: differential equations
• Modified Poisson-Nernst-Planck model with Coulomb and hard-sphere correlations
• Modified Poisson-Nernst-Planck model with accurate Coulomb correlation in variable media
• On the Compression of Low Rank Matrices
• SelInv---An Algorithm for Selected Inversion of a Sparse Symmetric Matrix
• Solving fluctuation-enhanced Poisson-Boltzmann equations
• Superfast Multifrontal Method for Large Structured Linear Systems of Equations

Cited in

(1)

• A Maxwell–Ampère Nernst–Planck Framework for Modeling Charge Dynamics

Describes a project that uses

Uses Software

• SelInv
• FLAM

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