BioFVM-X: an MPI+OpenMP 3-D simulator for biological systems

DOI10.1007/978-3-030-85633-5_18MaRDI QIDQ2142129zbMATH OpenOpenAlexFDO

Authors Gaurav Saxena, Miguel Ponce-de-Leon, Arnau Montagud, David Vicente Dorca, Alfonso Valencia

Publication date 25 May 2022

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://doi.org/10.1007/978-3-030-85633-5_18

zbMATH Keywords

MPIparallelizationmulti-scale modelingOpenMPshared-memorydistributed-memorylattice-free modeling

Mathematics Subject Classification ID

Systems biology, networks (92C42) Software, source code, etc. for problems pertaining to biology (92-04) Pathology, pathophysiology (92C32)

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Cites work

• scientific article; zbMATH DE number 2088244 (Why is no real title available?)
• A Multigrid Tutorial, Second Edition
• An Introduction to Numerical Analysis
• Numerical methods for partial differential equations. Finite difference and finite volume methods
• PaScaL\_TDMA: a library of parallel and scalable solvers for massive tridiagonal systems

Cited in

(2)

• BioFVM-X
• scientific article; zbMATH DE number 2090617 (Why is no real title available?)

Describes a project that uses

Uses Software

• BioFVM
• PaScaL_TDMA
• Biocellion
• PhysiCell
• Intel TBB
• Zoltan
• Global Arrays
• Chombo
• PETSc
• SPRNG
• hypre
• Chaste

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