Implicit and semi-implicit numerical schemes for the gradient flow of the formation of biological transport networks

DOI10.5802/SMAI-JCM.59MaRDI QIDQ2178652zbMATH OpenOpenAlexFDO

Authors Di Fang, Shi Jin, Peter Alexander Markowich, Ben{ôı}t Perthame

Publication date 11 May 2020

Published in The SMAI journal of computational mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.5802/smai-jcm.59

zbMATH Keywords

biological transport networksgradient flownumerical schemes

Mathematics Subject Classification ID

Nonlinear elliptic equations (35J60) Reaction-diffusion equations (35K57) PDEs in connection with biology, chemistry and other natural sciences (35Q92) PDEs on graphs and networks (ramified or polygonal spaces) (35R02) Finite difference methods for initial value and initial-boundary value problems involving PDEs (65M06) Flows in porous media; filtration; seepage (76S05) Physiological flows (76Z05) Physiological flow (92C35) Classical flows, reactions, etc. in chemistry (92E20)

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Cites work

• A mesoscopic model of biological transportation networks
• Analysis and applications of the exponential time differencing schemes and their contour integration modifications
• Biological transportation networks: Modeling and simulation
• scientific article; zbMATH DE number 2066946 (Why is no real title available?)
• scientific article; zbMATH DE number 3338857 (Why is no real title available?)
• Mathematical Analysis of a PDE System for Biological Network Formation
• Nonlinear stability of the implicit-explicit methods for the Allen-Cahn equation
• Notes on a PDE system for biological network formation
• ODE- and PDE-based modeling of biological transportation networks

Cited in

(12)

• Supplementary variable method for structure-preserving approximations to partial differential equations with deduced equations
• Energy-production-rate preserving numerical approximations to network generating partial differential equations
• An optimization principle for initiation and adaptation of biological transport networks
• On the blow-up criterion and global existence of a nonlinear PDE system in biological transport networks
• Optimisation of biological transport networks
• Computational Science and Its Applications – ICCSA 2004
• Efficient quantum algorithm for nonlinear reaction-diffusion equations and energy estimation
• A modified and efficient phase field model for the biological transport network
• Discontinuous Galerkin methods for network patterning phase-field models
• Numerical approach to centrality of optimal transportation networks
• Asymmetry and condition number of an elliptic-parabolic system for biological network formation
• Self-regulated biological transportation structures with general entropy dissipation: 2D case and leaf-shaped domain

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