Atom-specific persistent homology and its application to protein flexibility analysis
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Publication:2183365
DOI10.1515/cmb-2020-0001zbMath1439.92081arXiv1903.11037OpenAlexW3007356578WikidataQ112610301 ScholiaQ112610301MaRDI QIDQ2183365
Publication date: 27 May 2020
Published in: Computational and Mathematical Biophysics (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1903.11037
protein flexibilityconvolutional neural networkatom-specific topologyelement-specific persistent homologygradient boosting tree
Biochemistry, molecular biology (92C40) Homology and cohomology theories in algebraic topology (55N99)
Uses Software
Cites Work
- Using persistent homology and dynamical distances to analyze protein binding
- A topological approach for protein classification
- Coarse grained normal mode analysis vs. refined Gaussian network model for protein residue-level structural fluctuations
- Stability of persistence diagrams
- Localized homology
- Lipschitz functions have \(L_{p}\)-stable persistence
- Computing persistent homology
- Topological persistence and simplification
- A topological measurement of protein compressibility
- TopologyNet
- Unnamed Item