TDA

Statistical Tools for Topological Data Analysis

Last update: 24 January 2024

Copyright license: GNU General Public License, version 3.0

Software version identifier: 1.9, 1.7.5, 1.7.7, 1.8.2, 1.8.5, 1.8.6, 1.8.7, 1.8.8, 1.9.1

Source code repository: https://github.com/cran/TDA

Description

Tools for the statistical analysis of persistent homology and for density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries 'GUDHI' <https://project.inria.fr/gudhi/software/>, 'Dionysus' <https://www.mrzv.org/software/dionysus/>, and 'PHAT' <https://bitbucket.org/phat-code/phat/>. This package also implements the methods in Fasy et al. (2014) <doi:10.1214/14-AOS1252> and Chazal et al. (2014) <doi:10.1145/2582112.2582128> for analyzing the statistical significance of persistent homology features.

Cites work

Related Items (30)

Nonparametric Estimation of Probability Density Functions of Random Persistence Diagrams ⋮ Signal classification with a point process distance on the space of persistence diagrams ⋮ Topological recognition of critical transitions in time series of cryptocurrencies ⋮ Topological data analysis of financial time series: landscapes of crashes ⋮ `Holey' niche! finding holes in niche hypervolumes using persistence homology ⋮ Aspects of topological approaches for data science ⋮ ashapesampler ⋮ Topological data analysis approaches to uncovering the timing of ring structure onset in filamentous networks ⋮ Testing goodness of fit for point processes via topological data analysis ⋮ Atom-specific persistent homology and its application to protein flexibility analysis ⋮ On the topological data analysis extensions and comparisons ⋮ A \(k\)-points-based distance for robust geometric inference ⋮ The Persistence Landscape and Some of Its Properties ⋮ Geometric Metrics for Topological Representations ⋮ Topological features of multivariate distributions: dependency on the covariance matrix ⋮ Robust Topological Inference: Distance To a Measure and Kernel Distance ⋮ A primer on persistent homology of finite metric spaces ⋮ TDAvec ⋮ etree ⋮ \textsc{Phat} -- persistent homology algorithms toolbox ⋮ A persistence landscapes toolbox for topological statistics ⋮ Persistence Terrace for Topological Inference of Point Cloud Data ⋮ Challenges in topological object data analysis ⋮ HERMES: persistent spectral graph software ⋮ Phenotyping OSA: a time series analysis using fuzzy clustering and persistent homology ⋮ Unnamed Item ⋮ A simplified algorithm for identifying abnormal changes in dynamic networks ⋮ Biomolecular topology: modelling and analysis ⋮ Supervised learning with indefinite topological Kernels ⋮ Topological data analysis for the energy and stability of endohedral metallofullerenes

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