TDA

swMATH15508CRANTDAMaRDI QIDQ27396FDOQ27396

Statistical Tools for Topological Data Analysis

Brittany Terese Fasy

Last update: 24 January 2024

Copyright license: GNU General Public License, version 3.0

Software version identifier: 1.9, 1.7.5, 1.7.7, 1.8.2, 1.8.5, 1.8.6, 1.8.7, 1.8.8, 1.9.1

Source code repository: https://github.com/cran/TDA

Description

Tools for the statistical analysis of persistent homology and for density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries 'GUDHI' <https://project.inria.fr/gudhi/software/>, 'Dionysus' <https://www.mrzv.org/software/dionysus/>, and 'PHAT' <https://bitbucket.org/phat-code/phat/>. This package also implements the methods in Fasy et al. (2014) <doi:10.1214/14-AOS1252> and Chazal et al. (2014) <doi:10.1145/2582112.2582128> for analyzing the statistical significance of persistent homology features.

Cites work

• Confidence sets for persistence diagrams
• Stochastic Convergence of Persistence Landscapes and Silhouettes

Cited In (30)

• Topological features of multivariate distributions: dependency on the covariance matrix
• ashapesampler
• A primer on persistent homology of finite metric spaces
• Geometric Metrics for Topological Representations
• Topological data analysis of financial time series: landscapes of crashes
• The Persistence Landscape and Some of Its Properties
• Testing goodness of fit for point processes via topological data analysis
• A \(k\)-points-based distance for robust geometric inference
• `Holey' niche! finding holes in niche hypervolumes using persistence homology
• Aspects of topological approaches for data science
• Title not available (Why is that?)
• Persistence Terrace for Topological Inference of Point Cloud Data
• Robust Topological Inference: Distance To a Measure and Kernel Distance
• Nonparametric Estimation of Probability Density Functions of Random Persistence Diagrams
• Supervised learning with indefinite topological Kernels
• Signal classification with a point process distance on the space of persistence diagrams
• Topological data analysis for the energy and stability of endohedral metallofullerenes
• \textsc{Phat} -- persistent homology algorithms toolbox
• A persistence landscapes toolbox for topological statistics
• TDAvec
• On the topological data analysis extensions and comparisons
• Phenotyping OSA: a time series analysis using fuzzy clustering and persistent homology
• Atom-specific persistent homology and its application to protein flexibility analysis
• etree
• Topological data analysis approaches to uncovering the timing of ring structure onset in filamentous networks
• HERMES: persistent spectral graph software
• A simplified algorithm for identifying abnormal changes in dynamic networks
• Biomolecular topology: modelling and analysis
• Challenges in topological object data analysis
• Topological recognition of critical transitions in time series of cryptocurrencies

This page was built for software: TDA