A primer on persistent homology of finite metric spaces

DOI10.1007/s11538-019-00614-zzbMath1417.62013arXiv1905.13400OpenAlexW2946878362WikidataQ92364356 ScholiaQ92364356MaRDI QIDQ2002099

Facundo Mémoli, Kritika Singhal

Publication date: 11 July 2019

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1905.13400

zbMATH Keywords

finite metric spacessimplicial homologypersistence diagrams

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Neural biology (92C20) Other homology theories in algebraic topology (55N35)

Uses Software

• Gudhi
• Perseus
• javaPlex
• PHAT
• Dionysus
• jPlex
• TDA
• GitHub
• Ripser
• DIPHA
• TDAstats
• Scikit-tda
• CTL
• Topology ToolKit

Cites Work

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• Classifying clustering schemes
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• The theory of the interleaving distance on multidimensional persistence modules
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• PHAT – Persistent Homology Algorithms Toolbox
• The Structure and Stability of Persistence Modules
• Topology and data
• Topological pattern recognition for point cloud data
• A Bayesian Topological Framework for the Identification and Reconstruction of Subcellular Motion
• Quantifying Genetic Innovation: Mathematical Foundations for the Topological Study of Reticulate Evolution
• Decomposition of pointwise finite-dimensional persistence modules
• Topology of viral evolution
• Zigzag persistent homology and real-valued functions
• Corrections and Supplementaries to My Paper concerning Krull-Remak-Schmidt’s Theorem