Predicting rRNA-, RNA-, and DNA-binding proteins from primary structure with support vector machines

DOI10.1016/J.JTBI.2005.09.018MaRDI QIDQ2202097zbMATH OpenOpenAlexWikidataFDO

Authors Xiaojing Yu, Jianping Cao, Tieliu Shi, Yixue Li, Yu-Dong Cai

Publication date 17 September 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2005.09.018

zbMATH Keywords

support vector machines (SVMs)protein function predictionRNA-binding proteinDNA-binding proteinrRNA-binding protein

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)

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Cites work

• scientific article; zbMATH DE number 3673370 (Why is no real title available?)
• scientific article; zbMATH DE number 823069 (Why is no real title available?)
• Protein function classification via support vector machine approach
• SUPPORT VECTOR MACHINES FOR THAI PHONEME RECOGNITION
• SVM-Prot
• Support-vector networks

Cited in

(9)

• Computational Science - ICCS 2004
• Comprehensive comparative analysis and identification of RNA-binding protein domains: multi-class classification and feature selection
• Prediction of FMN-binding residues with three-dimensional probability distributions of interacting atoms on protein surfaces
• Predicting DNA- and RNA-binding proteins from sequences with kernel methods
• Neural network and SVM classifiers accurately predict lipid binding proteins, irrespective of sequence homology
• Predicting DNA binding proteins using support vector machine with hybrid fractal features
• Protein function classification via support vector machine approach
• RBSURFpred: modeling protein accessible surface area in real and binary space using regularized and optimized regression
• Prediction of RNA-protein interactions by combining deep convolutional neural network with feature selection ensemble method

Describes a project that uses

Uses Software

• SVM-Prot
• PISCES

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