Predicting rRNA-, RNA-, and DNA-binding proteins from primary structure with support vector machines

DOI10.1016/j.jtbi.2005.09.018zbMath1447.92318OpenAlexW2079120335WikidataQ45966250 ScholiaQ45966250MaRDI QIDQ2202097

Xiaojing Yu, Jianping Cao, Yixue Li, Tieliu Shi, Yu-Dong Cai

Publication date: 17 September 2020

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2005.09.018

zbMATH Keywords

support vector machines (SVMs)protein function predictionRNA-binding proteinDNA-binding proteinrRNA-binding protein

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)

Related Items

Predicting DNA- and RNA-binding proteins from sequences with kernel methods, Comprehensive comparative analysis and identification of RNA-binding protein domains: multi-class classification and feature selection, Predicting DNA binding proteins using support vector machine with hybrid fractal features, Prediction of RNA-protein interactions by combining deep convolutional neural network with feature selection ensemble method

Uses Software

• PISCES
• SVM-Prot

Cites Work

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• Protein function classification via support vector machine approach
• Support-vector networks
• SUPPORT VECTOR MACHINES FOR THAI PHONEME RECOGNITION
• SVM-Prot