Fast algorithms for large dense matrices with applications to biofluids
From MaRDI portal
Publication:2222292
DOI10.1016/j.jcp.2019.05.042zbMath1452.65052OpenAlexW2947042813MaRDI QIDQ2222292
Sarah D. Olson, Minghao W. Rostami
Publication date: 26 January 2021
Published in: Journal of Computational Physics (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jcp.2019.05.042
GMRESpreconditionerregularized StokesletsciliaKrylov subspace recyclingkernel-independent fast multipole method
Fluid-solid interactions (including aero- and hydro-elasticity, porosity, etc.) (74F10) Stokes and related (Oseen, etc.) flows (76D07) Applications to the sciences (65Z05) Numerical methods for partial differential equations, initial value and time-dependent initial-boundary value problems (65M99) Physiological flow (92C35) Preconditioners for iterative methods (65F08)
Related Items (3)
Parallel-in-time simulation of biofluids ⋮ A multigrid method for kernel functions acting on interacting structures with applications to biofluids ⋮ Passively parallel regularized stokeslets
Uses Software
Cites Work
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- A study of bacterial flagellar bundling
- A fast numerical method for computing doubly-periodic regularized Stokes flow in 3D
- An \(O(N)\) algorithm for constructing the solution operator to 2D elliptic boundary value problems in the absence of body loads
- Modeling slender bodies with the method of regularized Stokeslets
- A modified tree code: Don't laugh; it runs
- A kernel-independent adaptive fast multipole algorithm in two and three dimensions
- An adaptive fast direct solver for boundary integral equations in two dimensions
- A hierarchical \({\mathcal O}(N)\) force calculation algorithm
- A general system of images for regularized stokeslets and other elements near a plane wall
- \(\mathcal H^2\)-matrix arithmetics in linear complexity
- Data-sparse approximation of non-local operators by \(\mathcal H^2\)-matrices
- The method of images for regularized Stokeslets
- Hierarchical matrices. A means to efficiently solve elliptic boundary value problems
- Rapid solution of integral equations of classical potential theory
- A sparse matrix arithmetic based on \({\mathfrak H}\)-matrices. I: Introduction to \({\mathfrak H}\)-matrices
- A portable parallel particle program
- Sparse approximate inverse preconditioning for dense linear systems arising in computational electromagnetics
- Introduction to hierarchical matrices with applications.
- Efficient arithmetic operations for rank-structured matrices based on hierarchical low-rank updates
- Flexibly imposing periodicity in kernel independent FMM: a multipole-to-local operator approach
- On the use of approximate fundamental solutions: connections with the method of fundamental solutions and the method of regularized stokeslets
- A fast platform for simulating semi-flexible fiber suspensions applied to cell mechanics
- A fast direct solver for boundary integral equations in two dimensions
- Fast multipole preconditioners for sparse matrices arising from elliptic equations
- A fast adaptive multipole algorithm in three dimensions
- A sparse \({\mathcal H}\)-matrix arithmetic: General complexity estimates
- Data-sparse approximation by adaptive \({\mathcal H}^2\)-matrices
- \(\mathcal H^2\)-matrix approximation of integral operators by interpolation
- Sperm motility in the presence of boundaries
- Universal image systems for non-periodic and periodic Stokes flows above a no-slip wall
- Computation of the singular and regularized image systems for doubly-periodic Stokes flow in the presence of a wall
- A fast block low-rank dense solver with applications to finite-element matrices
- A fast multipole method for the Rotne-Prager-Yamakawa tensor and its applications
- Modeling the dynamics of an elastic rod with intrinsic curvature and twist using a regularized Stokes formulation
- A regularization method for the numerical solution of periodic Stokes flow
- A fast multipole method for the three-dimensional Stokes equations
- A kernel independent fast multipole algorithm for radial basis functions
- An \(O(N)\) direct solver for integral equations on the plane
- Accelerated Stokesian Dynamics simulations
- The Method of Regularized Stokeslets
- Simple and efficient representations for the fundamental solutions of Stokes flow in a half-space
- Finite Elements and Fast Iterative Solvers
- Hierarchical Matrices: Algorithms and Analysis
- Fast algorithms for hierarchically semiseparable matrices
- The action of waving cylindrical rings in a viscous fluid
- The immersed boundary method
- The method of regularized Stokeslets in three dimensions: Analysis, validation, and application to helical swimming
- Superfast Multifrontal Method for Large Structured Linear Systems of Equations
- Recycling Krylov Subspaces for Sequences of Linear Systems
- GMRES: A Generalized Minimal Residual Algorithm for Solving Nonsymmetric Linear Systems
- A Fast Adaptive Multipole Algorithm for Particle Simulations
- Boundary Integral and Singularity Methods for Linearized Viscous Flow
- On a Class of Preconditioning Methods for Dense Linear Systems from Boundary Elements
- A boundary element regularized Stokeslet method applied to cilia- and flagella-driven flow
- An Explicit Formula for Two-Dimensional Singly-Periodic Regularized Stokeslets Flow Bounded by a Plane Wall
- Numerical Computation of Doubly-Periodic Stokes Flow Bounded by a Plane with Applications to Nodal Cilia
- Dynamics of a Closed Rod with Twist and Bend in Fluid
- A Fast $ULV$ Decomposition Solver for Hierarchically Semiseparable Representations
- Rotational dynamics of a superhelix towed in a Stokes fluid
- Simulation of hydrodynamically interacting particles near a no-slip boundary
- Dynamics of an open elastic rod with intrinsic curvature and twist in a viscous fluid
- Sparse Inverse Preconditioning of Multilevel Fast Multipole Algorithm for Hybrid Integral Equations in Electromagnetics
- Combining Fast Multipole Techniques and an Approximate Inverse Preconditioner for Large Electromagnetism Calculations
- A model for the micro-structure in ciliated organisms
- The Inverse Fast Multipole Method: Using a Fast Approximate Direct Solver as a Preconditioner for Dense Linear Systems
- A fast algorithm for particle simulations
This page was built for publication: Fast algorithms for large dense matrices with applications to biofluids
