The method of regularized Stokeslets in three dimensions: Analysis, validation, and application to helical swimming

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Numerical computation in science and engineering
The immersed boundary method
Boundary Integral and Singularity Methods for Linearized Viscous Flow
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Flagellar Hydrodynamics
High order explicit methods for parabolic equations
The method of regularized stokeslets
High order accurate vortex methods with explicit velocity kernels
A convergent boundary integral method for three-dimensional water waves
Slender-body theory for slow viscous flow
Simulations of the Whirling Instability by the Immersed Boundary Method
Helical distributions of stokeslets
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Cited In (93)

Human sperm accumulation near surfaces: a simulation study
Hydrodynamic propulsion of human sperm
An overview of the method of fundamental solutions -- solvability, uniqueness, convergence, and stability
Modeling a semi-flexible filament in cellular Stokes flow using regularized Stokeslets
Symmetry breaking cilia-driven flow in the zebrafish embryo
Kernel aggregated fast multipole method. Efficient summation of Laplace and Stokes kernel functions
Image systems for regularised stokeslets at walls and free surfaces
Methods for suspensions of passive and active filaments
Modeling slender bodies with the method of regularized Stokeslets
Regularized single and double layer integrals in 3D Stokes flow
Numerical computation of doubly-periodic Stokes flow bounded by a plane with applications to nodal cilia
Regularized Stokeslet segments
A regularization method for the numerical solution of periodic Stokes flow
A kernel-independent treecode based on barycentric Lagrange interpolation
A treecode based on barycentric Hermite interpolation for electrostatic particle interactions
Numerical simulation of bundling of helical elastic rods in a viscous fluid
Stokesian peristaltic pumping in a three-dimensional tube with a phase-shifted asymmetry
Boundary integral solutions of coupled Stokes and Darcy flows
A domain decomposition solution of the Stokes-Darcy system in 3D based on boundary integrals
A single-layer based numerical method for the slender body boundary value problem
A multirate time integrator for regularized Stokeslets
A general system of images for regularized stokeslets and other elements near a plane wall
A general formulation of bead models applied to flexible fibers and active filaments at low Reynolds number
A fast method to compute triply-periodic Brinkman flows
Three-dimensional flow in Kupffer's vesicle
Application of the method of fundamental solutions and the radial basis functions for viscous laminar flow in wavy channel
Combined boundary singularity method and finite volume method with application to viscous deformation of polymer film in synthesis of sub-micron fibers
Integral equation methods for elastance and mobility problems in two dimensions
Optimal allocation of boundary singularities for Stokes flows about pairs of particles
A multi-scale model of \textit{Escherichia coli} chemotaxis from intracellular signaling pathway to motility and nutrient uptake in nutrient gradient and isotropic fluid environments
Interaction between arthropod filiform hairs in a fluid environment
Efficient simulation of thermally fluctuating biopolymers immersed in fluids on 1-micron, 1-second scales
An improved regularized fundamental solution to the 2-D steady-state Stokes equation
Enhanced flagellar swimming through a compliant viscoelastic network in Stokes flow
Mathematical embryology: the fluid mechanics of nodal cilia
The orientation of swimming biflagellates in shear flows
Rotational dynamics of a superhelix towed in a Stokes fluid
A Treecode Algorithm for 3D Stokeslets and Stresslets
Method of fundamental solutions for partial-slip fibrous filtration flows
The method of images for regularized Stokeslets
A posteriori error analysis of fluid-structure interactions: time dependent error
Two-fluid model of biofilm disinfection
Computation of the singular and regularized image systems for doubly-periodic Stokes flow in the presence of a wall
A regularised slender-body theory of non-uniform filaments
A fast numerical method for computing doubly-periodic regularized Stokes flow in 3D
Fluctuating force-coupling method for simulations of colloidal suspensions
A robust computational framework for simulating the dynamics of large assemblies of highly-flexible fibers immersed in viscous flow
Low-Reynolds-number swimming in a capillary tube
The wiggling trajectories of bacteria
Stokes-Darcy boundary integral solutions using preconditioners
The dynamics of sperm detachment from epithelium in a coupled fluid-biochemical model of hyperactivated motility
Applying a second-kind boundary integral equation for surface tractions in Stokes flow
Method of regularized sources for axisymmetric Stokes flow problems
Three-dimensional boundary singularity method for partial-slip flows
Validation of a simple method for representing spheres and slender bodies in an immersed boundary method for Stokes flow on an unbounded domain
Micro-swimming without flagella: propulsion by internal structures
A nearest-neighbour discretisation of the regularized stokeslet boundary integral equation
A fast platform for simulating semi-flexible fiber suspensions applied to cell mechanics
A three-dimensional model of flagellar swimming in a Brinkman fluid
Coupling biochemistry and hydrodynamics captures hyperactivated sperm motility in a simple flagellar model
Modeling viscoelastic networks in Stokes flow
On the use of approximate fundamental solutions: connections with the method of fundamental solutions and the method of regularized stokeslets
Cilium height difference between strokes is more effective in driving fluid transport in mucociliary clearance: a numerical study
A numerical method for inextensible elastic filaments in viscous fluids
An integral equation formulation for rigid bodies in Stokes flow in three dimensions
Interplay between Brownian and hydrodynamic tracer diffusion in suspensions of swimming microorganisms
Passively parallel regularized stokeslets
Computation of a regularized Brinkmanlet near a plane wall
Regularized image system for Stokes flow outside a solid sphere
Fast algorithms for large dense matrices with applications to biofluids
Micropharmacology: an in silico approach for assessing drug efficacy within a tumor tissue
Active cloaking in Stokes flows via reinforcement learning
Hydrodynamic interactions of sheets vs filaments: synchronization, attraction, and alignment
Trajectory of a model bacterium
Universal features of the shape of elastic fibres in shear flow
Stability of sedimenting flexible loops
The action of waving cylindrical rings in a viscous fluid
The Effect of Global Smoothness on the Accuracy of Treecodes
Viscous tubular-body theory for plane interfaces
Crowding accelerates the rotation of a bacterial rotor
A scalable method to model large suspensions of colloidal phoretic particles with arbitrary shapes
A multigrid method for kernel functions acting on interacting structures with applications to biofluids
A mixed-dimensional formulation for the simulation of slender structures immersed in an incompressible flow
Sharp quadrature error bounds for the nearest-neighbor discretization of the regularized stokeslet boundary integral equation
Parallel-in-time simulation of biofluids
Slender body theories for rotating filaments
The method of fundamental solutions for multi-particle Stokes flows: application to a ring-like array of spheres
2D force constraints in the method of regularized Stokeslets
Geometric phase methods with Stokes theorem for a general viscous swimmer
Flow induced by bacterial carpets and transport of microscale loads
Magnetically driven foldable shell type swimmers at Stokes flow
A locally corrected multiblob method with hydrodynamically matched grids for the Stokes mobility problem
Phoretic self-propulsion of helical active particles

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