A multi-scale model of \textit{Escherichia coli} chemotaxis from intracellular signaling pathway to motility and nutrient uptake in nutrient gradient and isotropic fluid environments

DOI10.1016/J.CAMWA.2015.12.019zbMATH Open1443.92061DBLPjournals/cma/XuBHN16OpenAlexW2197157139WikidataQ56041125 ScholiaQ56041125MaRDI QIDQ2007288FDOQ2007288

Yanyan Li

Publication date: 12 October 2020

Published in: Computers & Mathematics with Applications (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.camwa.2015.12.019

zbMATH Keywords

fluid dynamicsnutrient uptakemethod of regularized stokeslets\textit{E. coli} chemotaxisintracellular signaling pathwayRapidCell

Mathematics Subject Classification ID

Cell movement (chemotaxis, etc.) (92C17)

Cites Work

• New development in freefem++
• A three-dimensional computational method for blood flow in the heart. II: Contractile fibers
• Human sperm accumulation near surfaces: a simulation study
• An improved slender-body theory for Stokes flow
• Flagellar Hydrodynamics
• The method of regularized Stokeslets in three dimensions:  Analysis, validation, and application to helical swimming
• From Individual to Collective Behavior in Bacterial Chemotaxis
• Overview of mathematical approaches used to model bacterial chemotaxis. I: The single cell
• The method of regularized stokeslets
• The hydrodynamics of flagellar propulsion: helical waves
• A 3D motile rod-shaped monotrichous bacterial model
• Necessary conditions for a minimal model of receptor to show adaptive response over a wide range of levels of stimulus
• Evaluation of grid-based and grid-free methods to model microchannel transport-reaction

Cited In (3)

• An augmented Keller-Segel model for E. coli chemotaxis in fast-varying environments
• From Signal Transduction to Spatial Pattern Formation inE. coli: A Paradigm for Multiscale Modeling in Biology
• A ``trimer of dimers-based model for the chemotactic signal transduction network in bacterial chemotaxis

Uses Software

• FreeFem++
• BacSim
• AgentCell

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