A multi-scale model of \textit{Escherichia coli} chemotaxis from intracellular signaling pathway to motility and nutrient uptake in nutrient gradient and isotropic fluid environments

DOI10.1016/J.CAMWA.2015.12.019MaRDI QIDQ2007288zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Yanyan Li

Publication date 12 October 2020

Published in Computers & Mathematics with Applications (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.camwa.2015.12.019

zbMATH Keywords

fluid dynamicsnutrient uptakemethod of regularized stokeslets\textit{E. coli} chemotaxisintracellular signaling pathwayRapidCell

Mathematics Subject Classification ID

Cell movement (chemotaxis, etc.) (92C17)

Recommendations

• Overview of mathematical approaches used to model bacterial chemotaxis. I: The single cell
• A mathematical description of bacterial chemotaxis in response to two stimuli
• Macroscopic limits of pathway-based kinetic models for E. coli chemotaxis in large gradient environments
• Modeling, analysis and computational methods in population level chemotaxis
• Overview of mathematical approaches used to model bacterial chemotaxis. II: Bacterial popu\-lations

Cites work

• A 3D motile rod-shaped monotrichous bacterial model
• A three-dimensional computational method for blood flow in the heart. II: Contractile fibers
• An improved slender-body theory for Stokes flow
• Evaluation of grid-based and grid-free methods to model microchannel transport-reaction
• Flagellar Hydrodynamics
• From Individual to Collective Behavior in Bacterial Chemotaxis
• Human sperm accumulation near surfaces: a simulation study
• Necessary conditions for a minimal model of receptor to show adaptive response over a wide range of levels of stimulus
• New development in freefem++
• Overview of mathematical approaches used to model bacterial chemotaxis. I: The single cell
• The hydrodynamics of flagellar propulsion: helical waves
• The method of regularized Stokeslets in three dimensions:  Analysis, validation, and application to helical swimming
• The method of regularized stokeslets

Cited in

(8)

• An augmented Keller-Segel model for E. coli chemotaxis in fast-varying environments
• Modelling bacterial chemotaxis for indirectly binding attractants
• From Signal Transduction to Spatial Pattern Formation inE. coli: A Paradigm for Multiscale Modeling in Biology
• Sensitivity of the rate of nutrient uptake by chemotactic bacteria to physical and biological parameters in a turbulent environment
• A mathematical description of bacterial chemotaxis in response to two stimuli
• A model of strongly biased chemotaxis reveals the trade-offs of different bacterial migration strategies
• A ``trimer of dimers-based model for the chemotactic signal transduction network in bacterial chemotaxis
• Overview of mathematical approaches used to model bacterial chemotaxis. I: The single cell

Describes a project that uses

Uses Software

• AgentCell
• BacSim
• FreeFem++

This page was built for publication: A multi-scale model of \textit{Escherichia coli} chemotaxis from intracellular signaling pathway to motility and nutrient uptake in nutrient gradient and isotropic fluid environments

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2007288)