Efficient simulation of thermally fluctuating biopolymers immersed in fluids on 1-micron, 1-second scales
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Publication:2218586
PDEs with randomness, stochastic partial differential equations (35R60) Numerical solutions to stochastic differential and integral equations (65C30) Applications to the sciences (65Z05) Fluid-solid interactions (including aero- and hydro-elasticity, porosity, etc.) (74F10) Biomechanical solid mechanics (74L15) Stokes and related (Oseen, etc.) flows (76D07) Biological fluid mechanics (76Z99) Biomechanics (92C10)
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Cites work
- A boundary integral method for simulating the dynamics of inextensible vesicles suspended in a viscous fluid in 2D
- A Class of Methods for Solving Nonlinear Simultaneous Equations
- A poroelastic immersed boundary method with applications to cell biology
- A stochastic immersed boundary method for fluid-structure dynamics at microscopic length scales
- Fluid dynamics of dissolved polymer molecules in confined geometries
- Higher-order implicit strong numerical schemes for stochastic differential equations
- Hybrid continuum-particle method for fluctuating lipid bilayer membranes with diffusing protein inclusions
- Modeling a semi-flexible filament in cellular Stokes flow using regularized Stokeslets
- Numerical simulation of endocytosis: viscous flow driven by membranes with non-uniformly distributed curvature-inducing molecules
- On the foundations of the stochastic immersed boundary method
- Parameter estimation for the stochastically perturbed Navier-Stokes equations
- Simulating the dynamics of inextensible vesicles by the penalty immersed boundary method
- Simulation of osmotic swelling by the stochastic immersed boundary method
- Stochastic differential equations. An introduction with applications.
- Stochastic Eulerian Lagrangian methods for fluid-structure interactions with thermal fluctuations
- The composite Euler method for stiff stochastic differential equations
- The immersed boundary method
- The method of regularized stokeslets
- The method of regularized Stokeslets in three dimensions: Analysis, validation, and application to helical swimming
Cited in
(8)- A finite volume algorithm for the dynamics of filaments, rods, and beams
- Simulation of osmotic swelling by the stochastic immersed boundary method
- Numerical investigation of the micromechanical behavior of DNA immersed in a hydrodynamic flow
- A stochastic thermostat algorithm for coarse-grained thermomechanical modeling of large-scale soft matters: theory and application to microfilaments
- Spatially adaptive stochastic methods for fluid-structure interactions subject to thermal fluctuations in domains with complex geometries
- A COUPLED MOLECULAR-CONTINUUM HYBRID MODEL FOR THE SIMULATION OF MACROMOLECULAR DYNAMICS
- scientific article; zbMATH DE number 5049189 (Why is no real title available?)
- Fourier neural operator based fluid-structure interaction for predicting the vesicle dynamics
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