A poroelastic immersed boundary method with applications to cell biology

DOI10.1016/J.JCP.2014.10.004MaRDI QIDQ728858zbMATH OpenOpenAlexFDO

Authors Wanda Strychalski, Calina A. Copos, Owen L. Lewis, Robert D. Guy

Publication date 20 December 2016

Published in Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jcp.2014.10.004

zbMATH Keywords

fluid-structure interactionStokes flowhyperelasticitycell crawlingblebbing

Mathematics Subject Classification ID

Finite difference methods applied to problems in fluid mechanics (76M20) Finite difference methods for initial value and initial-boundary value problems involving PDEs (65M06) Physiological flows (76Z05) Cell biology (92C37)

Recommendations

• A POROUS VISCOELASTIC MODEL FOR THE CELL CYTOSKELETON
• A continuous energy-based immersed boundary method for elastic shells
• Viscoelastic immersed boundary methods for zero Reynolds number flow
• On the hyperelastic formulation of the immersed boundary method
• Simulating biofluid-structure interactions with an immersed boundary framework -- a review

Cites work

• scientific article; zbMATH DE number 3860529 (Why is no real title available?)
• scientific article; zbMATH DE number 3102391 (Why is no real title available?)
• 2–D Parachute Simulation by the Immersed Boundary Method
• A Simple Mesh Generator in MATLAB
• A comparison of implicit solvers for the immersed boundary equations
• A computational model of aquatic animal locomotion
• A computational model of bleb formation
• A continuum model of motility in ameboid cells
• A fast, robust, and non-stiff immersed boundary method
• A mls-based lattice spring model for simulating elasticity of materials
• A multigrid method for a model of the implicit immersed boundary equations
• An efficient semi-implicit immersed boundary method for the Navier-Stokes equations
• An immersed boundary energy-based method for incompressible viscoelasticity
• Biomechanics of the brain: a theoretical and numerical study of Biot's equations of consolidation theory with deformation-dependent permeability
• Cytoplasm dynamics and cell motion: Two-phase flow models
• Efficient solutions to robust, semi-implicit discretizations of the immersed boundary method
• Immersed finite element method and its applications to biological systems
• Implicit second-order immersed boundary methods with boundary mass
• Microstructural Randomness Versus Representative Volume Element in Thermomechanics
• Numerical analysis of blood flow in the heart
• On the hyperelastic formulation of the immersed boundary method
• Rheology of the Cytoskeleton
• The immersed boundary method
• The influence of hindered transport on the development of platelet thrombi under flow
• Unconditionally stable discretizations of the immersed boundary equations

Cited in

(23)

• A numerical method for osmotic water flow and solute diffusion with deformable membrane boundaries in two spatial dimension
• A continuous energy-based immersed boundary method for elastic shells
• A Lagrangian method for the treatment of freshly cleared cells in immersed boundary techniques
• A reciprocal theorem for biphasic poro-viscoelastic materials
• Sharp interface analysis of a diffuse interface model for cell blebbing with linker dynamics
• An arbitrary Lagrangian-Eulerian method for simulating interfacial dynamics between a hydrogel and a fluid
• An immersed boundary method for mass transfer through porous biomembranes under large deformations
• Phase-field model of cellular migration: three-dimensional simulations in fibrous networks
• A diffuse interface model for cell blebbing including membrane-cortex coupling with linker dynamics
• A Fast Accurate Boundary Integral Method for Potentials on Closely Packed Cells
• The surrounding cell method based on the S-FEM for analysis of FSI problems dealing with an immersed solid
• Multiphase modelling of precipitation-induced membrane formation
• 3D simulation of a viscous flow past a compliant model of arteriovenous-graft annastomosis
• Immersed finite element method and its applications to biological systems
• Eulerian-Lagrangian treatment of nondilute two-phase gels
• A POROUS VISCOELASTIC MODEL FOR THE CELL CYTOSKELETON
• Viscoelastic immersed boundary methods for zero Reynolds number flow
• Cardiac perfusion coupled with a structured coronary network tree
• Numerical analysis of the immersed boundary method for cell-based simulation
• Two finite element approaches for Darcy and Darcy-Brinkman flow through deformable porous media-mixed method vs. NURBS based (isogeometric) continuity
• A locally gradient-preserving reinitialization for level set functions
• General solutions of linear poro-viscoelastic materials in spherical coordinates
• Efficient simulation of thermally fluctuating biopolymers immersed in fluids on 1-micron, 1-second scales

Describes a project that uses

Uses Software

• DistMesh

This page was built for publication: A poroelastic immersed boundary method with applications to cell biology

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q728858)