Numerical analysis of the immersed boundary method for cell-based simulation
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Finite difference methods for initial value and initial-boundary value problems involving PDEs (65M06) Spectral methods applied to problems in fluid mechanics (76M22) Computational methods for problems pertaining to biology (92-08) Cell movement (chemotaxis, etc.) (92C17) Physiological flow (92C35) Cell biology (92C37)
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Cites work
- A comprehensive three-dimensional model of the cochlea
- A computational model of the mechanics of growth of the villous trophoblast bilayer
- A single cell-based model of the ductal tumour microarchitecture
- A single-cell approach in modeling the dynamics of tumor microregions
- A single-cell-based model of multicellular growth using the immersed boundary method
- An immersed boundary framework for modelling the growth of individual cells: an application to the early tumour development
- An implicit immersed boundary method for three-dimensional fluid-membrane interactions
- Chaste: A test-driven approach to software development for biological modelling
- Flow patterns around heart valves: A numerical method
- Hydromechanics of low-Reynolds-number flow. Part 2. Singularity method for Stokes flows
- IMMERSED BOUNDARY METHODS
- Immersed boundary model of aortic heart valve dynamics with physiological driving and loading conditions
- Immersed Interface Methods for Stokes Flow with Elastic Boundaries or Surface Tension
- Improved volume conservation in the computation of flows with immersed elastic boundaries
- Modeling viscoelastic networks and cell deformation in the context of the immersed boundary method
- On the volume conservation of the immersed boundary method
- Quantifying performance in the medusan mechanospace with an actively swimming three-dimensional jellyfish model
- Tether force constraints in Stokes flow by the immersed boundary method on a periodic domain
- The immersed boundary method
- Validation of a simple method for representing spheres and slender bodies in an immersed boundary method for Stokes flow on an unbounded domain
Cited in
(13)- Approximate Bayesian computation reveals the importance of repeated measurements for parameterising cell-based models of growing tissues
- Efficient solution methods for modelling slowly evolving mechanical phenomena in cells and tissues using the discrete element method
- A parallel Voronoi-based approach for mesoscale simulations of cell aggregate electropermeabilization
- An immersed boundary framework for modelling the growth of individual cells: an application to the early tumour development
- Adapting a plant tissue model to animal development: introducing cell sliding into VirtualLeaf
- A Lagrangian method for the treatment of freshly cleared cells in immersed boundary techniques
- Incorporating chemical signalling factors into cell-based models of growing epithelial tissues
- A single-cell-based model of multicellular growth using the immersed boundary method
- Free and interfacial boundaries in individual-based models of multicellular biological systems
- An adaptive numerical method for multi-cellular simulations of tissue development and maintenance
- A mixed immersed finite element method for fourth-order interface problems on surfaces
- Impact of force function formulations on the numerical simulation of centre-based models
- Three-dimensional simulations of the cell growth and cytokinesis using the immersed boundary method
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