Model free estimation of graphical model using gene expression data

DOI10.1214/20-AOAS1380MaRDI QIDQ2233152zbMATH OpenOpenAlexFDO

Authors Jenny Yang, Yang Liu, Yufeng Liu, Wei Sun

Publication date 14 October 2021

Published in The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1214/20-aoas1380

zbMATH Keywords

directed acyclic graphsgraphical modelsmodel free

Mathematics Subject Classification ID

Probabilistic graphical models (62H22) Applications of statistics to biology and medical sciences; meta analysis (62P10)

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Cites work

• 10.1162/153244303321897717
• \(\mathsf{PenPC}\): a two-step approach to estimate the skeletons of high-dimensional directed acyclic graphs
• A Non-Parametric Test of Independence
• Causality. Models, reasoning, and inference
• Causation, prediction, and search
• Computing the distribution of quadratic forms in normal variables
• Conservative independence-based causal structure learning in absence of adjacency faithfulness
• Efficient structure learning of Bayesian networks using constraints
• Empirical approximations for Hoeffding's test of bivariate independence using two Weibull extensions
• Estimating high-dimensional directed acyclic graphs with the PC-algorithm
• Estimating high-dimensional intervention effects from observational data
• scientific article; zbMATH DE number 3150484 (Why is no real title available?)
• Joint skeleton estimation of multiple directed acyclic graphs for heterogeneous population
• Multiple loci mapping via model-free variable selection
• Order-independent constraint-based causal structure learning
• Partial correlation estimation by joint sparse regression models
• PC algorithm for nonparanormal graphical models
• Save: a method for dimension reduction and graphics in regression
• Sliced Inverse Regression for Dimension Reduction
• Statistical analysis of network data with R
• Testing conditional independence via Rosenblatt transforms
• The three faces of faithfulness

Cited in

(3)

• On principal graphical models with application to gene network
• Compressed spectral screening for large-scale differential correlation analysis with application in selecting glioblastoma gene modules
• Error tolerant model for incorporating biological knowledge with expression data in estimating gene networks

Describes a project that uses

Uses Software

• PenPC
• TETRAD

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