Multi-stage splitting integrators for sampling with modified Hamiltonian Monte Carlo methods

DOI10.1016/j.jcp.2018.07.023zbMath1416.65517arXiv1807.04131OpenAlexW2846199606WikidataQ129520665 ScholiaQ129520665MaRDI QIDQ2311667

Elena Akhmatskaya, Tijana Radivojević, Mario Fernández-Pendás, Jesús María Sanz-Serna

Publication date: 4 July 2019

Published in: Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1807.04131

zbMATH Keywords

multi-stage integratorsmodified Hamiltonianenhanced samplingHamiltonian Monte Carlo method

Mathematics Subject Classification ID

Monte Carlo methods (65C05) Numerical methods for Hamiltonian systems including symplectic integrators (65P10)

Related Items

HMC: reducing the number of rejections by not using leapfrog and some results on the acceptance rate, Thread-Parallel Anisotropic Mesh Adaptation, Symmetrically Processed Splitting Integrators for Enhanced Hamiltonian Monte Carlo Sampling, Modified Hamiltonian Monte Carlo for Bayesian inference, Geometric Integration of Measure-Preserving Flows for Sampling

Cites Work

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• The No-U-Turn Sampler: Adaptively Setting Path Lengths in Hamiltonian Monte Carlo
• Multiple-time-stepping generalized hybrid Monte Carlo methods
• On an asymptotic method for computing the modified energy for symplectic methods
• Monitoring energy drift with shadow Hamiltonians
• Emulation of higher-order tensors in manifold Monte Carlo methods for Bayesian inverse problems
• GSHMC: An efficient method for molecular simulation
• Optimized Forest-Ruth- and Suzuki-like algorithms for integration of motion in many-body systems
• Adaptive multi-stage integrators for optimal energy conservation in molecular simulations
• Palindromic 3-stage splitting integrators, a roadmap
• Shadow hybrid Monte Carlo: an efficient propagator in phase space of macromolecules
• Practical Construction of Modified Hamiltonians
• Numerical Integrators for the Hybrid Monte Carlo Method
• On the Numerical Integration of Ordinary Differential Equations by Symmetric Composition Methods
• Geometric integrators and the Hamiltonian Monte Carlo method
• Methods of Reducing Sample Size in Monte Carlo Computations
• The Targeted Shadowing Hybrid Monte Carlo (TSHMC) Method