Reconciling event-labeled gene trees with MUL-trees and species networks

DOI10.1007/s00285-019-01414-8zbMath1423.05185arXiv1812.09002OpenAlexW2968416017WikidataQ92607214 ScholiaQ92607214MaRDI QIDQ2330637

Katharina T. Huber, Marc Hellmuth, Vincent L. Moulton

Publication date: 22 October 2019

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1812.09002

zbMATH Keywords

triplesphylogenetic networkgene evolutiontree reconciliationspecies evolutionMUL treenetwork reconciliation

Mathematics Subject Classification ID

Trees (05C05) Problems related to evolution (92D15) Applications of graph theory (05C90)

Related Items

Best match graphs and reconciliation of gene trees with species trees

Uses Software

• Genetree
• PADRE
• Proteinortho
• OrthoMCL

Cites Work

• Folding and unfolding phylogenetic trees and networks
• Correction of weighted orthology and paralogy relations -- complexity and algorithmic results
• Generating functions for multi-labeled trees
• Orthology relations, symbolic ultrametrics, and cographs
• The mathematics of xenology: di-cographs, symbolic ultrametrics, 2-structures and tree-representable systems of binary relations
• Fast algorithm for the reconciliation of gene trees and LGT networks
• Gene tree correction for reconciliation and species tree inference: complexity and algorithms
• Phylogenetic networks from multi-labelled trees
• DLS-trees: a model of evolutionary scenarios
• Phylogeny
• From Gene Trees to Species Trees through a Supertree Approach
• From Gene Trees to Species Trees
• Orthology Relation and Gene Tree Correction: Complexity Results