H-CLAP: hierarchical clustering within a linear array with an application in genetics

DOI10.1515/SAGMB-2013-0076MaRDI QIDQ2344255zbMATH OpenOpenAlexWikidataFDO

Authors Samiran Ghosh, Jeffrey P. Townsend

Publication date 13 May 2015

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1515/sagmb-2013-0076

zbMATH Keywords

geneticshierarchical clusteringlinear arrayMarkov clusteringconstrained prior

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Genetics and epigenetics (92D10)

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Cites work

• Finding Groups in Data
• Integrating robust clustering techniques in S-PLUS
• Introduction to algorithms
• Sampling-Based Approaches to Calculating Marginal Densities
• Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images
• The Collapsed Gibbs Sampler in Bayesian Computations with Applications to a Gene Regulation Problem

Cited in

(1)

• Bayesian hidden Markov models to identify RNA-protein interaction sites in PAR-CLIP

Describes a project that uses

Uses Software

• CpGProD
• clusfind
• TreeForm
• SWAKK

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