H-CLAP: hierarchical clustering within a linear array with an application in genetics

DOI10.1515/SAGMB-2013-0076zbMATH Open1311.62093OpenAlexW246427109WikidataQ41172091 ScholiaQ41172091MaRDI QIDQ2344255FDOQ2344255

Authors: Samiran Ghosh, Jeffrey P. Townsend 

Publication date: 13 May 2015

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/sagmb-2013-0076

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zbMATH Keywords

geneticshierarchical clusteringlinear arrayMarkov clusteringconstrained prior

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Genetics and epigenetics (92D10)

Cites Work

• Integrating robust clustering techniques in S-PLUS
• Finding Groups in Data
• The Collapsed Gibbs Sampler in Bayesian Computations with Applications to a Gene Regulation Problem
• Introduction to algorithms
• Sampling-Based Approaches to Calculating Marginal Densities
• Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images

Cited In (1)

• Bayesian hidden Markov models to identify RNA-protein interaction sites in PAR-CLIP

Uses Software

• SWAKK
• TreeForm
• clusfind
• CpGProD

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