Self-organizing map approaches for the haplotype assembly problem

DOI10.1016/J.MATCOM.2009.01.021MaRDI QIDQ2390401zbMATH OpenOpenAlexFDO

Authors Ling-Yun Wu, Rui-Sheng Wang, Zhen-Ping Li, Xiangsun Zhang, Luonan Chen

Publication date 22 July 2009

Published in Mathematics and Computers in Simulation (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.matcom.2009.01.021

zbMATH Keywords

SNPneural networkself-organizing maphaplotype assemblyminimum error correction

Mathematics Subject Classification ID

Linear programming (90C05) Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40) Integer programming (90C10)

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Cites work

• scientific article; zbMATH DE number 1945152 (Why is no real title available?)
• scientific article; zbMATH DE number 1877046 (Why is no real title available?)
• A study of the application of Kohonen-type neural networks to the travelling salesman problem
• Haplotype assembly from aligned weighted SNP fragments
• Neural networks in optimization
• Opportunities for combinatorial optimization in computational biology

Cited in

(7)

• The haplotype assembly model with genotype information and iterative local-exhaustive search algorithm
• Self-Organizing Approach for Automated Gene Identification
• An effective haplotype assembly algorithm based on hypergraph partitioning
• A clustering algorithm based on two distance functions for MEC model
• Enhanced evolutionary and heuristic algorithms for haplotype reconstruction problem using minimum error correction model
• Modeling data envelopment analysis by chance method in hybrid uncertain environments
• Maximum likelihood model based on minor allele frequencies and weighted Max-SAT formulation for haplotype assembly

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