Extended narrow escape with many windows for analyzing viral entry into the cell nucleus

DOI10.1007/S10955-016-1691-9MaRDI QIDQ2396598zbMATH OpenOpenAlexWikidataFDO

Authors Thibault Lagache, D. Holcman

Publication date 8 June 2017

Published in Journal of Statistical Physics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s10955-016-1691-9

zbMATH Keywords

Green's functionasymptotic formulasLaplace's equationnarrow escapeMFPTbiophysical modelingphysical virologyvirus trafficking

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Fokker-Planck equations (35Q84) Stochastic methods (Fokker-Planck, Langevin, etc.) applied to problems in time-dependent statistical mechanics (82C31) Cell biology (92C37)

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Cites work

• An asymptotic analysis of the mean first passage time for narrow escape problems. I: Two-dimensional domains
• An asymptotic analysis of the mean first passage time for narrow escape problems. II: The sphere
• Diffusion escape through a cluster of small absorbing windows
• Diffusion on a sphere with localized traps: mean first passage time, eigenvalue asymptotics, and Fekete points
• Diffusion through a cluster of small windows and flux regulation in microdomains
• Effective Motion of a Virus Trafficking Inside a Biological Cell
• Escape through a small opening: receptor trafficking in a synaptic membrane
• First Passage Statistics for the Capture of a Brownian Particle by a Structured Spherical Target with Multiple Surface Traps
• First-passage quantities of Brownian motion in a bounded domain with multiple targets: a unified approach
• Modeling DNA and virus trafficking in the cell cytoplasm
• Narrow escape. III: Non-smooth domains and Riemann surfaces
• Stochastic narrow escape in molecular and cellular biology

Cited in

(14)

• Monte Carlo tracking drift-diffusion trajectories algorithm for solving narrow escape problems
• Random walk on spheres algorithm for solving transient drift-diffusion-reaction problems
• A global random walk on spheres algorithm for transient heat equation and some extensions
• Modeling the early steps of cytoplasmic trafficking in viral infection and gene delivery
• Asymptotic analysis of the narrow escape problem in general shaped domain with several absorbing necks
• Random walk on spheres method for solving anisotropic drift-diffusion problems
• A random walk on small spheres method for solving transient anisotropic diffusion problems
• How receptor surface diffusion and cell rotation increase association rates
• Modeling DNA and virus trafficking in the cell cytoplasm
• First Passage Statistics for the Capture of a Brownian Particle by a Structured Spherical Target with Multiple Surface Traps
• Transport efficiency of passive diffusion of viral cargos in biological cells
• Asymptotic analysis of the narrow escape problem in dendritic spine shaped domain: three dimensions
• Stochastic simulation algorithms for solving narrow escape diffusion problems by introducing a drift to the target
• Mean escape time for randomly switching narrow gates in a steady flow

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