A probabilistic analysis of a discrete-time evolution in recombination

DOI10.1016/J.AAM.2017.06.004zbMATH Open1371.92088arXiv1603.07201OpenAlexW2963840454MaRDI QIDQ2399889FDOQ2399889

Authors: Servet Martínez 

Publication date: 24 August 2017

Published in: Advances in Applied Mathematics (Search for Journal in Brave)

Abstract: We give a closed form of the discrete-time evolution of a recombination transformation in population genetics. This decomposition allows to define a Markov chain in a natural way. We describe the geometric decay rate to the limit distribution, and the quasi-stationary behavior when conditioned to the event that the chain does not hit the limit distribution.

Full work available at URL: https://arxiv.org/abs/1603.07201

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zbMATH Keywords

partitionspopulation geneticsMarkov chainsrecombinationquasi-stationary distributionsgeometric decay rate

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Cites Work

• Erratum to: An Exactly Solved Model for Recombination, Mutation and Selection
• Functionals of critical multitype branching processes
• On Quasi-Stationary distributions in absorbing discrete-time finite Markov chains
• On the Probability Theory of Linkage in Mendelian Heredity
• Quasi-stationary distributions. Markov chains, diffusions and dynamical systems.
• Single-crossover recombination and ancestral recombination trees
• Title not available (Why is that?)
• Single-crossover recombination in discrete time
• The evolution of a population under recombination: how to linearise the dynamics
• The decay of linkage disequilibrium under random union of gametes: How to calculate Bennett's principal components
• Erratum and addendum to: ``The general recombination equation in continuous time and its solution

Cited In (13)

• Solving the migration-recombination equation from a genealogical point of view
• Nonlinear recombinations and generalized random transpositions
• An informational transition in conditioned Markov chains: applied to genetics and evolution
• A transformation of Markov jump processes and applications in genetic study
• Chromosome painting: how recombination mixes ancestral colors
• SELECTIVE ADVANTAGE OF RECOMBINATION IN EVOLVING PROTEIN POPULATIONS: A LATTICE MODEL STUDY
• Entropy production in nonlinear recombination models
• An exactly solvable model of random site-specific recombinations
• An estimator for the recombination rate from a continuously observed diffusion of haplotype frequencies
• Invariant measures of genetic recombination processes
• Corrigendum to: ``A probabilistic analysis of a discrete-time evolution in recombination
• Notes on Markov embedding
• On the evolution of recombination in haploids and diploids. I: Deterministic models

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