Genome analysis with distance to the nearest dissimilar nucleotide

DOI10.1016/J.JTBI.2011.01.038MaRDI QIDQ2413784zbMATH OpenOpenAlexWikidataFDO

Authors Vera Afreixo, Carlos A. C. Bastos, Armando J. Pinho, S. Garcia, Paulo Ferreira

Publication date 17 September 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2011.01.038

zbMATH Keywords

alignment-free genome comparisonDNA sequencesinter-nucleotide distancesnearest dissimilar distances

Mathematics Subject Classification ID

Software, source code, etc. for problems pertaining to biology (92-04) Genetics and epigenetics (92D10) Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20)

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Cites work

• Large scale features in DNA genomic signals

Cited in

(6)

• Euclidean distance analysis enables nucleotide skew analysis in viral genomes
• DNA barcode classification using general regression neural network with different distance models
• Three distances for rapid similarity analysis of DNA sequences
• Asynchronous Distance between Homologous DNA Sequences
• Placing Probes along the Genome Using Pairwise Distance Data
• Distance, correlation and mutual information among portraits of organisms based on complete genomes

Describes a project that uses

Uses Software

• TOPD/FMTS

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