Fitting birth-death processes to panel data with applications to bacterial DNA fingerprinting

DOI10.1214/13-AOAS673zbMath1283.92027arXiv1009.0893WikidataQ31033872 ScholiaQ31033872MaRDI QIDQ2441864

Marc A. Suchard, Charles R. Doss, Vladimir N. Minin, Ian Holmes, Midori Kato-Maeda

Publication date: 28 March 2014

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1009.0893

zbMATH Keywords

EM algorithm; tuberculosis; missing data; transposable elements; IS6110

Mathematics Subject Classification ID

62P10: Applications of statistics to biology and medical sciences; meta analysis

60J85: Applications of branching processes

92C40: Biochemistry, molecular biology

92C60: Medical epidemiology

92-08: Computational methods for problems pertaining to biology

92-04: Software, source code, etc. for problems pertaining to biology

Uses Software

• R
• msm