Monte Carlo simulations of enzymatic reactions in crowded media. Effect of the enzyme-obstacle relative size

DOI10.1016/J.MBS.2014.03.012MaRDI QIDQ2453777zbMATH OpenOpenAlexWikidataFDO

Authors Laura Pitulice, Eudald Vilaseca, Isabel Pastor, Sergio Madurga, Josep Lluís Garcés, Adriana Isvoran, Francesc Mas

Publication date 10 June 2014

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL http://hdl.handle.net/2445/104306

zbMATH Keywords

Monte Carlo simulationsMichaelis-Menten mechanismfractal kineticsmacromolecular crowdingdiffusion limited reactionstime dependent rate coefficient

Mathematics Subject Classification ID

Monte Carlo methods (65C05) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

Recommendations

• Multifractality in intracellular enzymatic reactions
• Multiscale modeling of diffusion in a crowded environment
• CHEMICALLY-CONTROLLED REACTION KINETICS ON FRACTALS: APPLICATION TO HYDROGEN EXCHANGE IN LYSOZYME
• Enzyme kinetics far from the standard quasi-steady-state and equilibrium approximations
• Diffusion fronts in enzyme-catalysed reactions

Cites work

• Mathematical analysis of models for reaction kinetics in intracellular environments
• Stochastic approaches for modelling in vivo reactions

Cited in

(3)

• Fractal dimension analysis of the Julia sets of controlled Brusselator model
• Multifractality in intracellular enzymatic reactions
• CHEMICALLY-CONTROLLED REACTION KINETICS ON FRACTALS: APPLICATION TO HYDROGEN EXCHANGE IN LYSOZYME

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