Tabu search algorithm for DNA sequencing by hybridization with isothermic libraries

DOI10.1016/j.compbiolchem.2003.12.002zbMath1088.92014OpenAlexW1983413015WikidataQ33197906 ScholiaQ33197906MaRDI QIDQ2490605

Piotr Formanowicz, Marta Kasprzak, Wojciech T. Markiewicz, Aleksandra Swiercz, Jacek Błażewicz

Publication date: 16 May 2006

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2003.12.002

zbMATH Keywords

HeuristicsTabu searchSequencing by hybridizationIsothermic libraries

Mathematics Subject Classification ID

Search theory (90B40) Approximation methods and heuristics in mathematical programming (90C59) Biochemistry, molecular biology (92C40) Software, source code, etc. for problems pertaining to biology (92-04)

Related Items (4)

An optimization approach to the reconstruction of positional DNA sequencing by hybridization with errors ⋮ Dealing with repetitions in sequencing by hybridization ⋮ DNA sequence assembly involving an acyclic graph model ⋮ Multistage isothermic sequencing by hybridization

Uses Software

• Tabu search

Cites Work

• Unnamed Item
• Sequencing by hybridization with isothermic oligonucleotide libraries
• On finding minimal length superstrings
• Complexity of DNA sequencing by hybridization.
• Tabu search for DNA sequencing with false negatives and false positives

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