Basecalling using hidden Markov models

DOI10.1016/j.jfranklin.2003.12.008zbMath1092.92015MaRDI QIDQ2492529

Petros T. Boufounos, Sameh El Difrawy, Dan Ehrlich

Publication date: 14 June 2006

Published in: Journal of the Franklin Institute (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jfranklin.2003.12.008

zbMATH Keywords

DNA sequencing; Hidden Markov models; Basecalling; PHRED

Mathematics Subject Classification ID

60J20: Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.)

92C40: Biochemistry, molecular biology

Uses Software

• Phrap

Cites Work

• Statistical learning formulation of the DNA base-calling problem and its solution in a Bayesian EM framework
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