Ribosome Builder: a software project to simulate the ribosome

DOI10.1016/J.COMPBIOLCHEM.2005.01.001zbMATH Open1096.92016OpenAlexW1973158048WikidataQ81655568 ScholiaQ81655568MaRDI QIDQ2500293FDOQ2500293

Authors: Yanyan Li 

Publication date: 23 August 2006

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://scholarworks.umt.edu/cgi/viewcontent.cgi?article=10599&context=etd

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zbMATH Keywords

RNAMacromolecular simulationRibosomal translationRibosome modelingSteered molecular dynamics

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Probabilistic models, generic numerical methods in probability and statistics (65C20) Software, source code, etc. for problems pertaining to biology (92-04) Biophysics (92C05)

Cites Work

• Title not available (Why is that?)
• A molecular model for transcription in the RNA world based on the ribosome large subunit

Cited In (2)

• Low‐Resolution Molecular Dynamics Simulations of the 30S Ribosomal Subunit
• Molecular dynamics simulation of the nascent peptide chain in the ribosomal exit tunnel

Uses Software

• PyMOL
• Lua
• Ribosome Builder
• VMD
• MMTK

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