Ribosome Builder: a software project to simulate the ribosome

DOI10.1016/J.COMPBIOLCHEM.2005.01.001MaRDI QIDQ2500293zbMATHOpenAlexWikidataFDO

Authors Yanyan Li

Publication date 23 August 2006

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://scholarworks.umt.edu/cgi/viewcontent.cgi?article=10599&context=etd

zbMATH Keywords

RNAMacromolecular simulationRibosomal translationRibosome modelingSteered molecular dynamics

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Probabilistic models, generic numerical methods in probability and statistics (65C20) Software, source code, etc. for problems pertaining to biology (92-04) Biophysics (92C05)

Recommendations

• An enhanced version of SMMP-open-source software package for simulation of proteins
• SMMP v. 3.0-simulating proteins and protein interactions in Python and Fortran
• Molecular dynamics simulation of the nascent peptide chain in the ribosomal exit tunnel
• Low‐Resolution Molecular Dynamics Simulations of the 30S Ribosomal Subunit
• Browndye: A software package for Brownian dynamics

Cites work

• scientific article; zbMATH DE number 1595161 (Why is no real title available?)
• A molecular model for transcription in the RNA world based on the ribosome large subunit

Cited in

(2)

• Molecular dynamics simulation of the nascent peptide chain in the ribosomal exit tunnel
• Low‐Resolution Molecular Dynamics Simulations of the 30S Ribosomal Subunit

Describes a project that uses

Uses Software

• PyMOL
• Lua
• Ribosome Builder
• VMD
• MMTK

This page was built for publication: Ribosome Builder: a software project to simulate the ribosome

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2500293)