Identification of circular codes in bacterial genomes and their use in a factorization method for retrieving the reading frames of genes

DOI10.1016/j.compbiolchem.2005.11.001zbMath1102.92019OpenAlexW2108174143WikidataQ82386099 ScholiaQ82386099MaRDI QIDQ2500353

Gabriel Frey, Christian J. Michel

Publication date: 23 August 2006

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2005.11.001

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Cyclic codes (94B15) Theory of error-correcting codes and error-detecting codes (94B99) Computational methods for problems pertaining to biology (92-08)

Related Items (13)

Maximal dinucleotide and trinucleotide circular codes ⋮ Dinucleotide circular codes ⋮ Strong comma-free codes in genetic information ⋮ Circular codes revisited: a statistical approach ⋮ Circular codes, symmetries and transformations ⋮ A permuted set of a trinucleotide circular code coding the 20 amino acids in variant nuclear codes ⋮ Essential molecular functions associated with the circular code evolution ⋮ A 2006 review of circular codes in genes ⋮ Varieties of comma-free codes ⋮ A relation between trinucleotide comma-free codes and trinucleotide circular codes ⋮ Strong trinucleotide circular codes ⋮ The maximal \(C^3\) self-complementary trinucleotide circular code \(X\) in genes of bacteria, eukaryotes, plasmids and viruses ⋮ Dinucleotide circular codes and bijective transformations

Cites Work

• Unnamed Item
• Circular codes in archaeal genomes
• An analytical model of gene evolution with six mutation parameters: An application to archaeal circular codes
• On codes with finite interpreting delay: a defect theorem

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