Identification of circular codes in bacterial genomes and their use in a factorization method for retrieving the reading frames of genes

DOI10.1016/J.COMPBIOLCHEM.2005.11.001zbMATH Open1102.92019DBLPjournals/candc/FreyM06aOpenAlexW2108174143WikidataQ82386099 ScholiaQ82386099MaRDI QIDQ2500353FDOQ2500353

Authors: Gabriel Frey, Christian J. Michel 

Publication date: 23 August 2006

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2005.11.001

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Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08) Cyclic codes (94B15) Theory of error-correcting codes and error-detecting codes (94B99)

Cites Work

• Title not available (Why is that?)
• Circular codes in archaeal genomes
• An analytical model of gene evolution with six mutation parameters: An application to archaeal circular codes
• On codes with finite interpreting delay: a defect theorem

Cited In (19)

• Strong comma-free codes in genetic information
• Maximal dinucleotide and trinucleotide circular codes
• Plant microRNA detection using the circular code information
• Dinucleotide circular codes
• Circular codes, symmetries and transformations
• Strong trinucleotide circular codes
• Dinucleotide circular codes and bijective transformations
• The maximal \(C^3\) self-complementary trinucleotide circular code \(X\) in genes of bacteria, eukaryotes, plasmids and viruses
• A 2006 review of circular codes in genes
• Analysis of CDS and ORF in prokaryotic genomes
• Varieties of comma-free codes
• A relation between trinucleotide comma-free codes and trinucleotide circular codes
• A permuted set of a trinucleotide circular code coding the 20 amino acids in variant nuclear codes
• Genome galaxy identified by the circular code theory
• Reading frame retrieval of genes: a new parameter of codon usage based on the circular code theory
• Circular codes in archaeal genomes
• An extended genetic scale of reading frame coding
• Circular codes revisited: a statistical approach
• Essential molecular functions associated with the circular code evolution

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