Identification of circular codes in bacterial genomes and their use in a factorization method for retrieving the reading frames of genes

DOI10.1016/J.COMPBIOLCHEM.2005.11.001MaRDI QIDQ2500353zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Gabriel Frey, Christian J. Michel

Publication date 23 August 2006

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2005.11.001

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08) Cyclic codes (94B15) Theory of error-correcting codes and error-detecting codes (94B99)

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Cites work

• scientific article; zbMATH DE number 1988973 (Why is no real title available?)
• An analytical model of gene evolution with six mutation parameters: An application to archaeal circular codes
• Circular codes in archaeal genomes
• On codes with finite interpreting delay: a defect theorem

Cited in

(19)

• Strong comma-free codes in genetic information
• Maximal dinucleotide and trinucleotide circular codes
• Dinucleotide circular codes
• Plant microRNA detection using the circular code information
• Circular codes, symmetries and transformations
• Strong trinucleotide circular codes
• Dinucleotide circular codes and bijective transformations
• The maximal \(C^3\) self-complementary trinucleotide circular code \(X\) in genes of bacteria, eukaryotes, plasmids and viruses
• A 2006 review of circular codes in genes
• Analysis of CDS and ORF in prokaryotic genomes
• Varieties of comma-free codes
• A relation between trinucleotide comma-free codes and trinucleotide circular codes
• A permuted set of a trinucleotide circular code coding the 20 amino acids in variant nuclear codes
• Genome galaxy identified by the circular code theory
• Reading frame retrieval of genes: a new parameter of codon usage based on the circular code theory
• Circular codes in archaeal genomes
• An extended genetic scale of reading frame coding
• Circular codes revisited: a statistical approach
• Essential molecular functions associated with the circular code evolution

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