Circular codes, symmetries and transformations

DOI10.1007/S00285-014-0806-7MaRDI QIDQ888294zbMATH OpenOpenAlexWikidataFDO

Authors E. Fimmel, Simone Giannerini, Diego L. González, Lutz Strüngmann

Publication date 30 October 2015

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00285-014-0806-7

zbMATH Keywords

symmetrygenetic codegroup theorycircular codesnucleotide transformations

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Other types of codes (94B60)

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Cites work

• scientific article; zbMATH DE number 706263 (Why is no real title available?)
• A 2006 review of circular codes in genes
• A classification of 20-trinucleotide circular codes
• A relation between trinucleotide comma-free codes and trinucleotide circular codes
• Circular codes revisited: a statistical approach
• Comma-Free Codes
• DNA, dichotomic classes and frame synchronization: a quasi-crystal framework
• Identification of all trinucleotide circular codes
• Identification of circular codes in bacterial genomes and their use in a factorization method for retrieving the reading frames of genes
• On dichotomic classes and bijections of the genetic code
• Strong trinucleotide circular codes

Cited in

(19)

• The quality of genetic code models in terms of their robustness against point mutations
• Circular tessera codes in the evolution of the genetic code
• Selfcomplementary, selfreverse cyclic nucleotide sequences codonically invariant under frame shifting
• \(n\)-nucleotide circular codes in graph theory
• Strong comma-free codes in genetic information
• Circular code motifs in genomes of eukaryotes
• Motif lengths of circular codes in coding sequences
• Parallelogram Morphisms and Circular Codes
• Dinucleotide circular codes and bijective transformations
• The maximal \(C^3\) self-complementary trinucleotide circular code \(X\) in genes of bacteria, eukaryotes, plasmids and viruses
• scientific article; zbMATH DE number 4161558 (Why is no real title available?)
• Circular codes, loop counting, and zeta-functions
• The relation between \(k\)-circularity and circularity of codes
• Genome galaxy identified by the circular code theory
• Reading frame retrieval of genes: a new parameter of codon usage based on the circular code theory
• The non-power model of the genetic code: a paradigm for interpreting genomic information
• An extended genetic scale of reading frame coding
• Circular codes revisited: a statistical approach
• On dichotomic classes and bijections of the genetic code

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