Identification of all trinucleotide circular codes

DOI10.1016/J.COMPBIOLCHEM.2010.03.004MaRDI QIDQ2362450zbMATH OpenOpenAlexWikidataFDO

Authors Christian J. Michel, Giuseppe Pirillo

Publication date 10 July 2017

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2010.03.004

zbMATH Keywords

necklacegenetic codegrowth functioncircular codetrinucleotidegene

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

Recommendations

• \(n\)-nucleotide circular codes in graph theory
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Cites work

• scientific article; zbMATH DE number 1988973 (Why is no real title available?)
• A relation between trinucleotide comma-free codes and trinucleotide circular codes
• An error-correcting code framework for genetic sequence analysis
• Circular codes and synchronization
• Comma-Free Codes
• Generating functions of circular codes
• Mutually symmetric and complementary triplets: differences in their use distinguish systematically between coding and non-coding genomic sequences
• On the bound of the synchronization delay of a local automaton
• Varieties of comma-free codes

Cited in

(23)

• Plant microRNA detection using the circular code information
• Dinucleotide circular codes
• Circular code motifs in transfer and 16S ribosomal RNAs: a possible translation code in genes
• A relation between trinucleotide comma-free codes and trinucleotide circular codes
• \(n\)-nucleotide circular codes in graph theory
• Genome galaxy identified by the circular code theory
• Strong trinucleotide circular codes
• Reading frame retrieval of genes: a new parameter of codon usage based on the circular code theory
• A necessary and sufficient condition for a set of sequences on the genetic alphabet to be a circular code
• The novel ideal symmetry genetic code table -- common purine-pyrimidine symmetry net for all RNA and DNA species
• A possible code in the genetic code
• A classification of 20-trinucleotide circular codes
• Circular codes in archaeal genomes
• On the hierarchy of trinucleotide \(n\)-circular codes and their corresponding amino acids
• Circular code motifs in genomes of eukaryotes
• Maximal dinucleotide and trinucleotide circular codes
• Maximal dinucleotide comma-free codes
• Circular codes, symmetries and transformations
• A genetic scale of reading frame coding
• A permuted set of a trinucleotide circular code coding the 20 amino acids in variant nuclear codes
• The relation between \(k\)-circularity and circularity of codes
• An extended genetic scale of reading frame coding
• A necklace algorithm to determine the growth function of trinucleotide circular codes

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