Identification of all trinucleotide circular codes

DOI10.1016/J.COMPBIOLCHEM.2010.03.004MaRDI QIDQ2362450zbMATH OpenOpenAlexWikidataFDO

Authors Christian J. Michel, Giuseppe Pirillo

Publication date 10 July 2017

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2010.03.004

zbMATH Keywords

circular codegenegenetic codegrowth functionnecklacetrinucleotide

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

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Cites work

• A relation between trinucleotide comma-free codes and trinucleotide circular codes
• An error-correcting code framework for genetic sequence analysis
• Circular codes and synchronization
• Comma-Free Codes
• Generating functions of circular codes
• scientific article; zbMATH DE number 1988973 (Why is no real title available?)
• Mutually symmetric and complementary triplets: differences in their use distinguish systematically between coding and non-coding genomic sequences
• On the bound of the synchronization delay of a local automaton
• Varieties of comma-free codes

Cited in

(24)

• Plant microRNA detection using the circular code information
• A permuted set of a trinucleotide circular code coding the 20 amino acids in variant nuclear codes
• The novel ideal symmetry genetic code table -- common purine-pyrimidine symmetry net for all RNA and DNA species
• Circular codes in archaeal genomes
• The relation between \(k\)-circularity and circularity of codes
• An extended genetic scale of reading frame coding
• Circular code motifs in transfer and 16S ribosomal RNAs: a possible translation code in genes
• On the hierarchy of trinucleotide \(n\)-circular codes and their corresponding amino acids
• Reading frame retrieval of genes: a new parameter of codon usage based on the circular code theory
• A necessary and sufficient condition for a set of sequences on the genetic alphabet to be a circular code
• A necklace algorithm to determine the growth function of trinucleotide circular codes
• \(n\)-nucleotide circular codes in graph theory
• Maximal dinucleotide and trinucleotide circular codes
• Maximal dinucleotide comma-free codes
• Dinucleotide circular codes
• A classification of 20-trinucleotide circular codes
• scientific article; zbMATH DE number 1342318 (Why is no real title available?)
• A possible code in the genetic code
• Genome galaxy identified by the circular code theory
• Strong trinucleotide circular codes
• Circular code motifs in genomes of eukaryotes
• Circular codes, symmetries and transformations
• A genetic scale of reading frame coding
• A relation between trinucleotide comma-free codes and trinucleotide circular codes

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