Residue interaction network analysis of Dronpa and a DNA clamp

DOI10.1016/J.JTBI.2014.01.023MaRDI QIDQ2632644zbMATHOpenAlexWikidataFDO

Authors Guang Hu, Wenying Yan, Jianhong Zhou, Bairong Shen

Publication date 15 May 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2014.01.023

zbMATH Keywords

network theorysmall-worldcommunication pathwayprotein topology

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Systems biology, networks (92C42)

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Cites work

• Collective dynamics of `small-world' networks
• Cutoff variation induces different topological properties: a new discovery of amino acid network within protein
• Residue centrality in alpha helical polytopic transmembrane protein structures

Cited in

(5)

• Cutoff variation induces different topological properties: a new discovery of amino acid network within protein
• Donut-shaped fingerprint in homologous polypeptide relationships -- a topological feature related to pathogenic structural changes in conformational disease
• Residue centrality in alpha helical polytopic transmembrane protein structures
• Applications of graph theory in studying protein structure, dynamics, and interactions
• Prediction of interface residue based on the features of residue interaction network

Describes a project that uses

Uses Software

• InterViewer
• Cytoscape
• CMView

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