Importance of metabolic coupling for the dynamics of gene expression following a diauxic shift in \textit{Escherichia coli}

DOI10.1016/J.JTBI.2011.11.010MaRDI QIDQ285158zbMATH OpenOpenAlexWikidataFDO

Authors Valentina Baldazzi, Delphine Ropers, Johannes Geiselmann, Hidde de Jong, Daniel Kahn

Publication date 19 May 2016

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2011.11.010

zbMATH Keywords

systems biologyhybrid modelsmicrobiologymodeling and identification

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

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Cites work

• scientific article; zbMATH DE number 1090658 (Why is no real title available?)
• A methodological basis for description and analysis of systems with complex switch-like interactions
• Comparing different ODE modelling approaches for gene regulatory networks
• Dynamics in high-dimensional model gene networks
• Modeling the onset of virulence in a pectinolytic bacterium
• Qualitative dynamics of piecewise-linear differential equations: a discrete mapping approach
• Qualitative simulation of genetic regulatory networks using piecewise-linear models
• Qualitative simulation of the initiation of sporulation in \textit{Bacillus subtilis}
• Symbolic reachability analysis of genetic regulatory networks using discrete abstractions
• The transition from differential equations to Boolean networks: A case study in simplifying a regulatory network model

Cited in

(6)

• An integrated model of glucose and galactose metabolism regulated by the GAL genetic switch
• Network analysis of common differential genes identifies key genes and important modules underlying extracellular electron transfer processes
• Qualitative Behavior of a Metabolic Pathway with Hybrid Feedback
• Dynamics of complex feedback architectures in metabolic pathways
• Dynamic optimization of metabolic networks coupled with gene expression
• Modelling and analysis of a gene-regulatory feed-forward loop with basal expression of the second regulator

Describes a project that uses

Uses Software

• GNA

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