Bacterial genomics and computational group theory: the BioGAP package for GAP

DOI10.1007/978-3-662-44199-2_12MaRDI QIDQ2879100zbMATH OpenOpenAlexFDO

Authors Attila Egri-Nagy, Andrew Francis, Volker Gebhardt

Publication date 8 September 2014

Published in Mathematical Software – ICMS 2014 (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-662-44199-2_12

zbMATH Keywords

computational group theorybacterial genomics

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Symbolic computation and algebraic computation (68W30) Software, source code, etc. for problems pertaining to group theory (20-04)

Recommendations

• Group-theoretic models of the inversion process in bacterial genomes
• An algebraic view of bacterial genome evolution
• Bacterial phylogeny in the Cayley graph
• A new algebraic approach to genome rearrangement models
• On the similarity of sets of permutations and its applications to genome comparison

Cited in

(5)

• Bacterial phylogeny in the Cayley graph
• A representation-theoretic approach to the calculation of evolutionary distance in bacteria
• Group-theoretic models of the inversion process in bacterial genomes
• Maximum likelihood estimates of pairwise rearrangement distances
• Position and content paradigms in genome rearrangements: the wild and crazy world of permutations in genomics

Describes a project that uses

Uses Software

• VIZ
• TikZ
• BioGAP
• Graphviz
• GAP

This page was built for publication: Bacterial genomics and computational group theory: the BioGAP package for GAP

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2879100)