Bacterial genomics and computational group theory: the BioGAP package for GAP

DOI10.1007/978-3-662-44199-2_12zbMATH Open1402.92296OpenAlexW188700152MaRDI QIDQ2879100FDOQ2879100

Authors: Attila Egri-Nagy, Andrew Francis, Volker Gebhardt 

Publication date: 8 September 2014

Published in: Mathematical Software – ICMS 2014 (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-662-44199-2_12

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zbMATH Keywords

computational group theorybacterial genomics

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Symbolic computation and algebraic computation (68W30) Software, source code, etc. for problems pertaining to group theory (20-04)

Cited In (5)

• A representation-theoretic approach to the calculation of evolutionary distance in bacteria
• Group-theoretic models of the inversion process in bacterial genomes
• Maximum likelihood estimates of pairwise rearrangement distances
• Position and content paradigms in genome rearrangements: the wild and crazy world of permutations in genomics
• Bacterial phylogeny in the Cayley graph

Uses Software

• GAP
• Graphviz
• BioGAP
• TikZ
• VIZ

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