Estimating effect sizes of differentially expressed genes for power and sample-size assessments in microarray experiments

DOI10.1111/J.1541-0420.2011.01618.XzbMATH Open1274.62839OpenAlexW1998128037WikidataQ47373827 ScholiaQ47373827MaRDI QIDQ2893379FDOQ2893379

Authors: Shigeyuki Matsui, Hisashi Noma 

Publication date: 20 June 2012

Published in: Biometrics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1111/j.1541-0420.2011.01618.x

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• scientific article; zbMATH DE number 2220337

zbMATH Keywords

powerempirical Bayessample sizeeffect sizemicroarrayshierarchical mixture modelsgene screening

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10)

Cites Work

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• A Direct Approach to False Discovery Rates
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• Statistical significance for genomewide studies
• Strong Control, Conservative Point Estimation and Simultaneous Conservative Consistency of False Discovery Rates: A Unified Approach
• Large-Scale Simultaneous Hypothesis Testing
• Size, power and false discovery rates
• Estimating the Proportion of True Null Hypotheses, with application to DNA Microarray Data
• Detecting differential gene expression with a semiparametric hierarchical mixture method
• Empirical Bayes Confidence Intervals Based on Bootstrap Samples
• Bayesian Robust Inference for Differential Gene Expression in Microarrays with Multiple Samples
• Empirical Bayes estimates for large-scale prediction problems
• Sample Size Calculations Based on Ranking and Selection in Microarray Experiments
• Title not available (Why is that?)
• Sample size determination in microarray experiments for class comparison and prognostic classification

Cited In (10)

• Multi-subgroup gene screening using semi-parametric hierarchical mixture models and the optimal discovery procedure: application to a randomized clinical trial in multiple myeloma
• Effect-size estimation using semiparametric hierarchical mixture models in disease-association studies with neuroimaging data
• Power and sample size estimation in high dimensional biology
• Efficient testing and effect size estimation for set‐based genetic association inference via semiparametric multilevel mixture modeling
• Sample size reassessment for a two-stage design controlling the false discovery rate
• Two-stage analysis for selecting fixed numbers of features in omics association studies
• General power and sample size calculations for high-dimensional genomic data
• An empirical Bayes optimal discovery procedure based on semiparametric hierarchical mixture models
• Assessing Differential Gene Expression with Small Sample Sizes in Oligonucleotide Arrays Using a Mean‐Variance Model
• Sample size calculation based on generalized linear models for differential expression analysis in RNA-seq data

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