Applying statistical criteria to choose optimal metaparameters in gene fragment recognition

DOI10.1007/S10559-016-9804-7zbMATH Open1343.60107OpenAlexW2317423737MaRDI QIDQ289802FDOQ289802

Authors: Alexey Ostrovsky 

Publication date: 31 May 2016

Published in: Cybernetics and Systems Analysis (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s10559-016-9804-7

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zbMATH Keywords

ergodicityMarkov modelslikelihood ratio testBayesian mixturesexongene fragment recognitionhidden stateintronnucleotideoptimal metaparameters

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Parametric hypothesis testing (62F03) Bayesian inference (62F15) Genetics and epigenetics (92D10) Markov chains (discrete-time Markov processes on discrete state spaces) (60J10) Stochastic systems in control theory (general) (93E03)

Cites Work

• A new look at the statistical model identification
• The $\chi^2$ Test of Goodness of Fit
• Determination of the order of a Markov chain by Akaike's information criterion
• Using EM-algorithm for gene classification

Uses Software

• GenBank

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