Incorporation of flexible objectives and time-linked simulation with flux balance analysis

DOI10.1016/J.JTBI.2013.12.009MaRDI QIDQ291587zbMATH OpenOpenAlexWikidataFDO

Authors Elsa W. Birch, Madeleine Udell, Markus W. Covert

Publication date 10 June 2016

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Copyright license Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International

Full work available at URL https://doi.org/10.1016/j.jtbi.2013.12.009

zbMATH Keywords

integrated modelingmetabolism

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

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Cited in

(3)

• Discretised flux balance analysis for reaction-diffusion simulation of single-cell metabolism
• Dynamic flux balance analysis with nonlinear objective function
• An energetic reformulation of kinetic rate laws enables scalable parameter estimation for biochemical networks

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