Parametric analysis for ungapped Markov models of evolution

DOI10.1145/1597036.1597048zbMATH Open1298.92070OpenAlexW2058835242MaRDI QIDQ2930271FDOQ2930271

Authors: Balaji Venkatachalam, David Fernández-Baca, Balaji Venkatachalam 

Publication date: 18 November 2014

Published in: ACM Transactions on Algorithms (Search for Journal in Brave)

Full work available at URL: https://lib.dr.iastate.edu/rtd/20974

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zbMATH Keywords

Markov modelssensitivity analysiscomputational biologyphylogenetic treesparametric analysisevolutionary tresssequence alignmnent

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Problems related to evolution (92D15)

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• An improved algorithm for statistical alignment of sequences related by a star tree
• Combinatorial Pattern Matching
• Parametric analysis of alignment and phylogenetic uncertainty
• Theoretical analysis of principal components in an umbrella model of intraspecific evolution

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