Parametric multiple sequence alignment and phylogeny construction
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Publication:876718
DOI10.1016/S1570-8667(03)00078-9zbMath1115.92045MaRDI QIDQ876718
Timo Seppäläinen, David Fernández Baca, Giora Slutzki
Publication date: 26 April 2007
Published in: Journal of Discrete Algorithms (Search for Journal in Brave)
Problems related to evolution (92D15) Applications of mathematical programming (90C90) Computational methods for problems pertaining to biology (92-08)
Related Items (3)
Strongly polynomial bounds for multiobjective and parametric global minimum cuts in graphs and hypergraphs ⋮ Lower bounds for optimal alignments of binary sequences ⋮ Parametric analysis of alignment and phylogenetic uncertainty
Cites Work
- Parametric stable marriage and minimum cuts
- Efficient methods for multiple sequence alignment with guaranteed error bounds
- Parametric optimization of sequence alignment
- Constructing the minimization diagram of a two-parameter problem
- Aligning sequences via an evolutionary tree
- Multiple Sequence Alignment as a Facility-Location Problem
- Trees, Stars, and Multiple Biological Sequence Alignment
- Parametric Combinatorial Computing and a Problem of Program Module Distribution
- Leaf Pairs and Tree Dissections
- Minimal Mutation Trees of Sequences
- Mathematical Techniques for Efficient Record Segmentation in Large Shared Databases
- Algorithms on Strings, Trees and Sequences
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