Parametric multiple sequence alignment and phylogeny construction

DOI10.1016/S1570-8667(03)00078-9zbMATH Open1115.92045MaRDI QIDQ876718FDOQ876718

Authors: Timo Seppäläinen, David Fernández-Baca, Giora Slutzki 

Publication date: 26 April 2007

Published in: Journal of Discrete Algorithms (Search for Journal in Brave)

Recommendations

• scientific article; zbMATH DE number 1615271
• Parametric analysis of alignment and phylogenetic uncertainty
• Parametric optimization of sequence alignment
• Bounds for parametric sequence comparison
• scientific article; zbMATH DE number 742991

zbMATH Keywords

phylogenetic treesensitivity analysiscomputational biologyevolutionary treemultiple alignment

Mathematics Subject Classification ID

Applications of mathematical programming (90C90) Problems related to evolution (92D15) Computational methods for problems pertaining to biology (92-08)

Cites Work

• Algorithms on Strings, Trees and Sequences
• Title not available (Why is that?)
• Title not available (Why is that?)
• Title not available (Why is that?)
• Aligning sequences via an evolutionary tree: complexity and approximation
• Title not available (Why is that?)
• Parametric Combinatorial Computing and a Problem of Program Module Distribution
• Efficient methods for multiple sequence alignment with guaranteed error bounds
• Constructing the minimization diagram of a two-parameter problem
• Mathematical Techniques for Efficient Record Segmentation in Large Shared Databases
• Title not available (Why is that?)
• Minimal Mutation Trees of Sequences
• Parametric optimization of sequence alignment
• Trees, Stars, and Multiple Biological Sequence Alignment
• Multiple sequence alignment as a facility-location problem
• Leaf Pairs and Tree Dissections
• Title not available (Why is that?)
• Parametric stable marriage and minimum cuts

Cited In (12)

• Combinatorial Pattern Matching
• Parametric analysis of alignment and phylogenetic uncertainty
• Title not available (Why is that?)
• Lower bounds for optimal alignments of binary sequences
• Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
• Title not available (Why is that?)
• Parametric inference for biological sequence analysis
• Title not available (Why is that?)
• Phylogenetic analysis of nucleotide sequences: An algebraic approach
• Strongly polynomial bounds for multiobjective and parametric global minimum cuts in graphs and hypergraphs
• Probabilistic ancestral sequences and multiple alignments
• Trees, Stars, and Multiple Biological Sequence Alignment

This page was built for publication: Parametric multiple sequence alignment and phylogeny construction

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q876718)