Stochastic hybrid systems for studying biochemical processes

DOI10.1098/RSTA.2010.0211zbMATH Open1211.37117OpenAlexW2147556100WikidataQ37797774 ScholiaQ37797774MaRDI QIDQ2997245FDOQ2997245

Authors: Abhyudai Singh, J. P. Hespanha 

Publication date: 6 May 2011

Published in: Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1098/rsta.2010.0211

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zbMATH Keywords

gene regulatory networksnegative feedbackstochastic hybrid systemsstochastic chemical kineticsmoment closuregene autoregulation

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Dynamical systems in biology (37N25) Ordinary differential equations and systems with randomness (34F05) Classical flows, reactions, etc. in chemistry (92E20)

Cites Work

• Hybrid modeling of noise reduction by a negatively autoregulated system
• A derivative matching approach to moment closure for the stochastic logistic model
• Evolutionary Bioinformatics

Cited In (25)

• Hybrid modelling in biology: a classification review
• Moment Analysis of Linear Time-Varying Dynamical Systems with Renewal Transitions
• Modeling and Simulation of Biochemical Processes Using Stochastic Hybrid Systems: The Sugar Cataract Development Process
• Stability analysis for stochastic hybrid systems: a survey
• Analyzing oscillatory behavior with formal methods
• Moment closure approximations for stochastic kinetic models with rational rate laws
• Self‐regulation in a stochastic model of chemical self‐replication
• Constraints on fluctuations in sparsely characterized biological systems
• Decisiveness of stochastic systems and its application to hybrid models
• Push-forward method for piecewise deterministic biochemical simulations
• Protein noise and distribution in a two-stage gene-expression model extended by an mRNA inactivation loop
• Transcriptional bursting diversifies the behaviour of a toggle switch: hybrid simulation of stochastic gene expression
• Precise parameter synthesis for stochastic biochemical systems
• Stochastic modelling and control of antibiotic subtilin production
• Model checking of biological systems
• Automated verification and synthesis of stochastic hybrid systems: a survey
• Moment-based analysis of stochastic hybrid systems with renewal transitions
• Robust control for uncertain impulsive systems with input constraints and external disturbance
• Title not available (Why is that?)
• Adaptive simulation of hybrid stochastic and deterministic models for biochemical systems
• External Interactions on Hybrid Models of Biological Systems
• Stochastic hybrid models of gene regulatory networks -- a PDE approach
• Approximately bisimilar symbolic models for randomly switched stochastic systems
• Approximations of piecewise deterministic Markov processes and their convergence properties
• Theory of hybrid dynamical systems and its applications to biological and medical systems

Uses Software

• StochDynTools

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