Stochastic hybrid systems for studying biochemical processes

DOI10.1098/RSTA.2010.0211MaRDI QIDQ2997245zbMATH OpenOpenAlexWikidataFDO

Authors Abhyudai Singh, J. P. Hespanha

Publication date 6 May 2011

Published in Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1098/rsta.2010.0211

zbMATH Keywords

gene regulatory networksnegative feedbackstochastic hybrid systemsstochastic chemical kineticsmoment closuregene autoregulation

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Dynamical systems in biology (37N25) Ordinary differential equations and systems with randomness (34F05) Classical flows, reactions, etc. in chemistry (92E20)

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Cites work

• A derivative matching approach to moment closure for the stochastic logistic model
• Evolutionary Bioinformatics
• Hybrid modeling of noise reduction by a negatively autoregulated system

Cited in

(25)

• Hybrid modelling in biology: a classification review
• Stability analysis for stochastic hybrid systems: a survey
• Moment Analysis of Linear Time-Varying Dynamical Systems with Renewal Transitions
• Modeling and Simulation of Biochemical Processes Using Stochastic Hybrid Systems: The Sugar Cataract Development Process
• Analyzing oscillatory behavior with formal methods
• Moment closure approximations for stochastic kinetic models with rational rate laws
• Self‐regulation in a stochastic model of chemical self‐replication
• Constraints on fluctuations in sparsely characterized biological systems
• Decisiveness of stochastic systems and its application to hybrid models
• Push-forward method for piecewise deterministic biochemical simulations
• Transcriptional bursting diversifies the behaviour of a toggle switch: hybrid simulation of stochastic gene expression
• Protein noise and distribution in a two-stage gene-expression model extended by an mRNA inactivation loop
• Stochastic modelling and control of antibiotic subtilin production
• Precise parameter synthesis for stochastic biochemical systems
• Automated verification and synthesis of stochastic hybrid systems: a survey
• Model checking of biological systems
• Moment-based analysis of stochastic hybrid systems with renewal transitions
• Robust control for uncertain impulsive systems with input constraints and external disturbance
• scientific article; zbMATH DE number 7455746 (Why is no real title available?)
• Adaptive simulation of hybrid stochastic and deterministic models for biochemical systems
• External Interactions on Hybrid Models of Biological Systems
• Stochastic hybrid models of gene regulatory networks -- a PDE approach
• Approximately bisimilar symbolic models for randomly switched stochastic systems
• Approximations of piecewise deterministic Markov processes and their convergence properties
• Theory of hybrid dynamical systems and its applications to biological and medical systems

Describes a project that uses

Uses Software

• StochDynTools

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