A Spatial Dirichlet Process Mixture Model for Clustering Population Genetics Data

DOI10.1111/j.1541-0420.2010.01484.xzbMath1217.62187WikidataQ33687662 ScholiaQ33687662MaRDI QIDQ3013968

Howard D. Bondell, Brian J. Reich

Publication date: 19 July 2011

Published in: Biometrics (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc3043140

zbMATH Keywords

model-based clustering; Bayesian nonparametrics; Dirichlet process prior; landscape genetics; microsatellite data

Mathematics Subject Classification ID

62H30: Classification and discrimination; cluster analysis (statistical aspects)

62P10: Applications of statistics to biology and medical sciences; meta analysis

62F15: Bayesian inference

92D10: Genetics and epigenetics

62G99: Nonparametric inference

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Uses Software

• STRUCTURE

Cites Work

• Unnamed Item
• Unnamed Item
• Mixtures of Dirichlet processes with applications to Bayesian nonparametric problems
• The two-parameter Poisson-Dirichlet distribution derived from a stable subordinator
• Markov chain Monte Carlo methods and the label switching problem in Bayesian mixture modeling
• A Bayesian analysis of some nonparametric problems
• Variable selection in clustering via Dirichlet process mixture models
• Variable Selection for Model-Based High-Dimensional Clustering and Its Application to Microarray Data
• Retrospective Markov chain Monte Carlo methods for Dirichlet process hierarchical models
• Bayesian cluster analysis
• Multiple Hypothesis Testing by Clustering Treatment Effects
• Bayesian Variable Selection in Clustering High-Dimensional Data