Natural vs. random protein sequences: discovering combinatorics properties on amino acid words

DOI10.1016/J.JTBI.2015.11.022zbMATH Open1343.92388OpenAlexW2188163004WikidataQ45952761 ScholiaQ45952761MaRDI QIDQ304845FDOQ304845

Authors: Daniele Santoni, Giovanni Felici, Davide Vergni 

Publication date: 26 August 2016

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2015.11.022

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zbMATH Keywords

amino acid associationcombinatorics of wordsprotein sequencerandom sequence

Mathematics Subject Classification ID

Permutations, words, matrices (05A05) Protein sequences, DNA sequences (92D20)

Cites Work

• Support-vector networks
• Improvements to Platt's SMO Algorithm for SVM Classifier Design
• Learning the kernel matrix with semidefinite programming
• Natural/random protein classification models based on star network topological indices
• Topological maps of protein sequences

Cited In (9)

• Co-evolution and information signals in biological sequences
• Co-evolution and Information Signals in Biological Sequences
• Walking through protein sequence space
• Elman RNN based classification of proteins sequences on account of their mutual information
• Mathematical models of random arrangements of amino acids in sequences
• RUNS OF AMINO ACIDS ARE LONGER THAN EXPECTED IN PROTEINS BASED ON A GRAPH THEORY REPRESENTATION OF THE GENETIC CODE
• Nonlinear deterministic structures and the randomness of protein sequences.
• Natural/random protein classification models based on star network topological indices
• Characterization of protein primary sequences based on partial ordering

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