Fast string kernels using inexact matching for protein sequences
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Publication:3093231
zbMATH Open1222.92029MaRDI QIDQ3093231FDOQ3093231
Publication date: 12 October 2011
Full work available at URL: http://www.jmlr.org/papers/v5/leslie04a.html
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Applications of statistics to biology and medical sciences; meta analysis (62P10) Learning and adaptive systems in artificial intelligence (68T05) Biochemistry, molecular biology (92C40)
Cited In (17)
- Versatile string kernels
- Optimal string clustering based on a Laplace-like mixture and EM algorithm on a set of strings
- Potential Functions for Signals and Symbolic Sequences
- Graph-Based Representations in Pattern Recognition
- Fast kernels for inexact string matching.
- A Class of New Kernels Based on High-Scored Pairs of k-Peptides for SVMs and Its Application for Prediction of Protein Subcellular Localization
- Machine Learning: ECML 2004
- Fast structural alignment of biomolecules using a hash table, n-grams and string descriptors
- Distance metric learning for graph structured data
- Maximum margin classifier working in a set of strings
- On using physico-chemical properties of amino acids in string kernels for protein classification via support vector machines
- Framework for kernel regularization with application to protein clustering
- Kernels for sequentially ordered data
- Efficient computation of gapped substring kernels on large alphabets
- The graph matching problem
- All fingers are not the same: handling variable-length sequences in a discriminative setting using conformal multi-instance kernels
- Extended pairwise local alignment of wild card DNA/RNA sequences using dynamic programming
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