Correspondence of Trap Spaces in Different Models of Bioregulatory Networks

DOI10.1137/17M1155302zbMATH Open1393.37101DBLPjournals/siamads/SchwiegerSR18OpenAlexW2809069200WikidataQ57981875 ScholiaQ57981875MaRDI QIDQ3176280FDOQ3176280

Authors Robert Schwieger, Heike Siebert, Susanna Röblitz

Publication date 19 July 2018

Published in SIAM Journal on Applied Dynamical Systems (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1137/17m1155302

zbMATH Keywords

ordinary differential equationattractorinvariant setBoolean networktrap space

Mathematics Subject Classification ID

Dynamical systems in biology (37N25) Systems biology, networks (92C42) Difference equations (39A99) Qualitative theory for ordinary differential equations (34C99)

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Cites work

• scientific article; zbMATH DE number 3482629 (Why is no real title available?)
• scientific article; zbMATH DE number 3100403 (Why is no real title available?)
• An effective network reduction approach to find the dynamical repertoire of discrete dynamic networks
• Computing maximal and minimal trap spaces of Boolean networks
• Deriving behavior of Boolean bioregulatory networks from subnetwork dynamics
• Hierarchy of models: From qualitative to quantitative analysis of circadian rhythms in cyanobacteria
• Hybrid Systems: Computation and Control
• Nonlinear systems. Analysis, stability, and control
• On the relationship of steady states of continuous and discrete models arising from biology
• Piecewise linear and Boolean models of chemical reaction networks
• Viability theory

Cited in

(7)

• Two classes of ODE models with switch-like behavior
• Ramp approximations of sigmoid control functions in gene networks
• Minimal trap spaces of logical models are maximal siphons of their Petri net encoding
• Self-sustaining positive feedback loops in discrete and continuous systems
• From Boolean networks to linear dynamical systems: a simplified route
• Relations between the conditions of admitting cycles in Boolean and ODE network systems
• On the relationship of steady states of continuous and discrete models arising from biology

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